RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SELENONQ9NZV5 590 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 FADS2P1A8MWK0 482 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 AREL1O15033 823 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 AXIN1O15169 862 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 OR10H2O60403 315 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 ALBP02768 609 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 PDHA2P29803 388 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 CD6P30203 668 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 PRKCQQ04759 706 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 LIPEQ05469 1076 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 CYP4F3Q08477 520 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 LRP8Q14114 963 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 GRB7Q14451 532 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 PDCD4Q53EL6 469 aaKnown RBP11.23□□□□□ -0.61
VPS4A-201ENST00000254950 CGB2Q6NT52 195 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 ADGRG6Q86SQ4 1221 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 KRT73Q86Y46 540 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 DENND6BQ8NEG7 585 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 TRPV3Q8NET8 790 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 OR5AR1Q8NGP9 310 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 DENND2DQ9H6A0 471 aaPredicted RBP11.23□□□□□ -0.61
VPS4A-201ENST00000254950 SUFUQ9UMX1 484 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 PPIL1Q9Y3C6 166 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 MTCH2Q9Y6C9 303 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 TRBV5-4A0A0C4DH59 114 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 RSL1D1O76021 490 aaKnown RBP11.23□□□□□ -0.61
VPS4A-201ENST00000254950 ABATP80404 500 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 RIPK1Q13546 671 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 NFATC4Q14934 902 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 TMEM196Q5HYL7 178 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 LETMD1Q6P1Q0 360 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 ZNF614Q8N883 585 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 TSPEARQ8WU66 669 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 CYGBQ8WWM9 190 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 LRRC3BQ96PB8 259 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 SLC6A17Q9H1V8 727 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 SUSD2Q9UGT4 822 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 RPS6KA6Q9UK32 745 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 PTGDR2Q9Y5Y4 395 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 DGKBQ9Y6T7 804 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 A0A0G2JN53 185 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 A0A1W2PP18 115 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 ERN1O75460 977 aaKnown RBP11.22□□□□□ -0.61
VPS4A-201ENST00000254950 WFS1O76024 890 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 HRH2P25021 359 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 HTR6P50406 440 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 MEF2AQ02078 507 aaPredicted RBP11.22□□□□□ -0.61
VPS4A-201ENST00000254950 DPTQ07507 201 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 DLX2Q07687 328 aaPredicted RBP11.22□□□□□ -0.61
VPS4A-201ENST00000254950 TMEM207Q6UWW9 146 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 SH2D5Q6ZV89 423 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 UBE2Q1Q7Z7E8 422 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 CYP4Z1Q86W10 505 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 KIAA2013Q8IYS2 634 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 TPD52L3Q96J77 140 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 GPR78Q96P69 363 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 CCDC106Q9BWC9 280 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 MUC13Q9H3R2 512 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 C3orf14Q9HBI5 128 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 SEMA3GQ9NS98 782 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 PTBP2Q9UKA9 531 aaKnown RBP11.22□□□□□ -0.61
VPS4A-201ENST00000254950 A0A0J9YVX5 310 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 DHRS12A0PJE2 317 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 SAC3D1A6NKF1 404 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 ERI3O43414 337 aaKnown RBP11.22□□□□□ -0.61
VPS4A-201ENST00000254950 ALDH4A1P30038 563 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 DGKQP52824 942 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 GRIK2Q13002 908 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 SLC9A5Q14940 896 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 ABRAXAS2Q15018 415 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 HKDC1Q2TB90 917 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 NXPE4Q6UWF7 544 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 IZUMO2Q6UXV1 221 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 TECPR1Q7Z6L1 1165 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 PROSER1Q86XN7 944 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 SLC22A15Q8IZD6 547 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 CAMKVQ8NCB2 501 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 COQ10AQ96MF6 247 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 ABCG4Q9H172 646 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 C1orf21Q9H246 121 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 FANCEQ9HB96 536 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 FBXW2Q9UKT8 454 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 TMCC3Q9ULS5 477 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 ANGPT4Q9Y264 503 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 PDYNP01213 254 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 KLK1P06870 262 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 POLR2CP19387 275 aaPredicted RBP11.22□□□□□ -0.61
VPS4A-201ENST00000254950 ITGAXP20702 1163 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 SRP54P61011 504 aaKnown RBP11.22□□□□□ -0.61
VPS4A-201ENST00000254950 YPEL5P62699 121 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 SBSNQ6UWP8 590 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 PRR23BQ6ZRT6 265 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 AMIGO1Q86WK6 493 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 ZFAND4Q86XD8 727 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 IL17RCQ8NAC3 791 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 USP7Q93009 1102 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 AIG1Q9NVV5 245 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 HRASLS2Q9NWW9 162 aa11.22□□□□□ -0.61
VPS4A-201ENST00000254950 ZNF638Q14966 1978 aaKnown RBP11.22□□□□□ -0.61
VPS4A-201ENST00000254950 EPOPA6NHQ4 379 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms