RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 KBTBD8Q8NFY9 601 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 ZNF566Q969W8 418 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 UCK2Q9BZX2 261 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 ARNT2Q9HBZ2 717 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 HEBP1Q9NRV9 189 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 MS4A12Q9NXJ0 267 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 PEX16Q9Y5Y5 336 aa13.96□□□□□ -0.17
SDC1-201ENST00000254351 ARNTLO00327 626 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 SNX4O95219 450 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 TSPAN12O95859 305 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 PKMP14618 531 aaKnown RBP13.96□□□□□ -0.18
SDC1-201ENST00000254351 DDX5P17844 614 aaKnown RBP13.96□□□□□ -0.18
SDC1-201ENST00000254351 RGRP47804 291 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 ELP6Q0PNE2 266 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 ARHGEF7Q14155 803 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 PROX2Q3B8N5 592 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 NADSYN1Q6IA69 706 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 OVOS1Q6IE37 1185 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 ZNF557Q8N988 423 aaPredicted RBP13.96□□□□□ -0.18
SDC1-201ENST00000254351 MDGA1Q8NFP4 955 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 PDLIM5Q96HC4 596 aaKnown RBP13.96□□□□□ -0.18
SDC1-201ENST00000254351 IL4I1Q96RQ9 567 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 FAM124BQ9H5Z6 455 aaPredicted RBP13.96□□□□□ -0.18
SDC1-201ENST00000254351 CLCA3PQ9Y6N3 262 aa13.96□□□□□ -0.18
SDC1-201ENST00000254351 LOC730098B7Z3J9 87 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 HAS3O00219 553 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 LRRTM2O43300 516 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 TMCC2O75069 709 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 TNFRSF21O75509 655 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 NPPAP01160 153 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 ADRA2AP08913 450 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 DNAJA1P31689 397 aaKnown RBP13.95□□□□□ -0.18
SDC1-201ENST00000254351 CHRNEQ04844 493 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 GRIK2Q13002 908 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 IL18R1Q13478 541 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 DDX39BQ13838 428 aaKnown RBP13.95□□□□□ -0.18
SDC1-201ENST00000254351 KIAA0040Q15053 153 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 SLC46A3Q7Z3Q1 461 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 LSRQ86X29 649 aaPredicted RBP13.95□□□□□ -0.18
SDC1-201ENST00000254351 CD200R1Q8TD46 325 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 SNX18Q96RF0 628 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 LRTM1Q9HBL6 345 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 CCNB1IP1Q9NPC3 277 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 LATS2Q9NRM7 1088 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 IMPAD1Q9NX62 359 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 WWOXQ9NZC7 414 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 RHCGQ9UBD6 479 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 DNMT3LQ9UJW3 386 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 EVPLLA8MZ36 301 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 BCKDHAP12694 445 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 POLR2EP19388 210 aaKnown RBP13.95□□□□□ -0.18
SDC1-201ENST00000254351 CYP4F8P98187 520 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 USP39Q53GS9 565 aaKnown RBP13.95□□□□□ -0.18
SDC1-201ENST00000254351 UBXN11Q5T124 520 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 FAM131AQ6UXB0 335 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 ZNF605Q86T29 641 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 KIAA1958Q8N8K9 716 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 WDR36Q8NI36 951 aaKnown RBP13.95□□□□□ -0.18
SDC1-201ENST00000254351 BRSK1Q8TDC3 778 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 CCDC115Q96NT0 180 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 ZNF382Q96SR6 550 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 NMRK2Q9NPI5 230 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 A8MUA0 341 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 RAMP2O60895 175 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 RPS19P39019 145 aaKnown RBP13.95□□□□□ -0.18
SDC1-201ENST00000254351 FEN1P39748 380 aaKnown RBP13.95□□□□□ -0.18
SDC1-201ENST00000254351 GNPDA1P46926 289 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 PRKCDQ05655 676 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 GPR50Q13585 617 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 CTSL3PQ5NE16 218 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 LDLRAD1Q5T700 205 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 PXDC1Q5TGL8 231 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 FAM20CQ8IXL6 584 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 AADATQ8N5Z0 425 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 OR7D4Q8NG98 312 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 OR6J1Q8NGC5 347 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 OR10T2Q8NGX3 314 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 APOLD1Q96LR9 279 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 PANX1Q96RD7 426 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 POLR1EQ9GZS1 481 aaKnown RBP13.95□□□□□ -0.18
SDC1-201ENST00000254351 ATP13A1Q9HD20 1204 aa13.95□□□□□ -0.18
SDC1-201ENST00000254351 ARIH1Q9Y4X5 557 aaPredicted RBP13.95□□□□□ -0.18
SDC1-201ENST00000254351 LOC105371267A0A1B0GV96 52 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 CCDC182A6NF36 153 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 ARHGAP33O14559 1287 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 ACPPP15309 386 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 HNF4AP41235 474 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 MLLT6P55198 1093 aaPredicted RBP13.94□□□□□ -0.18
SDC1-201ENST00000254351 KEAP1Q14145 624 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 MFSD10Q14728 455 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 TJAP1Q5JTD0 557 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 TAPT1Q6NXT6 567 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 MSANTD2Q6P1R3 559 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 CLECL1Q8IZS7 167 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 TMEM132CQ8N3T6 1108 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 BHMTQ93088 406 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 IL1RAPQ9NPH3 570 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 ELOVL2Q9NXB9 296 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 DUSP12Q9UNI6 340 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 HSPB11Q9Y547 144 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms