RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TAC3Q9UHF0 121 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 GPN3Q9UHW5 284 aaPredicted RBP22.91■■□□□ 1.26
SHMT1-206ENST00000579558 PADI2Q9Y2J8 665 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 CFAP46Q8IYW2 2715 aa22.91■■□□□ 1.26
SHMT1-206ENST00000579558 NRP2O60462 931 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 CCNDBP1O95273 360 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 ALAS2P22557 587 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 ARSFP54793 590 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 VSX2P58304 361 aaPredicted RBP22.9■■□□□ 1.26
SHMT1-206ENST00000579558 GRM7Q14831 915 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 DUPD1Q68J44 220 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 FAM45BPQ6NSW5 357 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 PALM2Q8IXS6 379 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 TTC29Q8NA56 475 aaPredicted RBP22.9■■□□□ 1.26
SHMT1-206ENST00000579558 C9orf43Q8TAL5 461 aaPredicted RBP22.9■■□□□ 1.26
SHMT1-206ENST00000579558 FAM45AQ8TCE6 357 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 LINGO1Q96FE5 620 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 ZNF285Q96NJ3 590 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 DHRS4Q9BTZ2 278 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 IFT80Q9P2H3 777 aaPredicted RBP22.9■■□□□ 1.26
SHMT1-206ENST00000579558 NDOR1Q9UHB4 597 aa22.9■■□□□ 1.26
SHMT1-206ENST00000579558 UTP11Q9Y3A2 253 aaKnown RBP22.9■■□□□ 1.26
SHMT1-206ENST00000579558 HEMK1Q9Y5R4 338 aaPredicted RBP22.9■■□□□ 1.26
SHMT1-206ENST00000579558 A0A0J9YVX5 310 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 OR2A25A4D2G3 310 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 E7ENX8 843 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 SRPX2O60687 465 aaPredicted RBP22.89■■□□□ 1.25
SHMT1-206ENST00000579558 C8GP07360 202 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 GCGRP47871 477 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 PMS2P54278 862 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 TAP2Q03519 686 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 CBLBQ13191 982 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 SP140Q13342 867 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 SLC9A5Q14940 896 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 NKAIN1Q4KMZ8 207 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 ICE2Q659A1 982 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 CAPN12Q6ZSI9 719 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 TTLL10Q6ZVT0 673 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 RNF44Q7L0R7 432 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 MCOLN3Q8TDD5 553 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 C16orf45Q96MC5 204 aaPredicted RBP22.89■■□□□ 1.25
SHMT1-206ENST00000579558 SAYSD1Q9NPB0 183 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 CUTCQ9NTM9 273 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 MOCS1Q9NZB8 636 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 GRHL1Q9NZI5 618 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 ANKMY1Q9P2S6 941 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 ADAMTS6Q9UKP5 1117 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 VWA7Q9Y334 891 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 PSAT1Q9Y617 370 aa22.89■■□□□ 1.25
SHMT1-206ENST00000579558 A0A1B0GX78 115 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 RFPL1O75677 317 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 FDXRP22570 491 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 IMPA1P29218 277 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 IL2P60568 153 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 PRDX1Q06830 199 aaKnown RBP22.88■■□□□ 1.25
SHMT1-206ENST00000579558 WASHC2DQ5SRD0 308 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 THEMIS2Q5TEJ8 643 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 YOD1Q5VVQ6 348 aaPredicted RBP22.88■■□□□ 1.25
SHMT1-206ENST00000579558 FRMPD2BQ6IN97 320 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 ZNF572Q7Z3I7 529 aaPredicted RBP22.88■■□□□ 1.25
SHMT1-206ENST00000579558 ADAMTS17Q8TE56 1095 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 PYROXD1Q8WU10 500 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 ABHD17AQ96GS6 310 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 OLFM1Q99784 485 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 ZFYVE21Q9BQ24 234 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 PLCD4Q9BRC7 762 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 RAB17Q9H0T7 212 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 PDE10AQ9Y233 779 aa22.88■■□□□ 1.25
SHMT1-206ENST00000579558 BOD1L1Q8NFC6 3051 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 DSCR3O14972 297 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 EIF3HO15372 352 aaKnown RBP eCLIP22.87■■□□□ 1.25
SHMT1-206ENST00000579558 SLC16A5O15375 505 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 PLA2G2AP14555 144 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 PGGT1BP53609 377 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 CKAP4Q07065 602 aaKnown RBP22.87■■□□□ 1.25
SHMT1-206ENST00000579558 STRA8Q7Z7C7 330 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 SLC26A11Q86WA9 606 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 PAQR7Q86WK9 346 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 APLFQ8IW19 511 aaPredicted RBP22.87■■□□□ 1.25
SHMT1-206ENST00000579558 LRRC56Q8IYG6 542 aaPredicted RBP22.87■■□□□ 1.25
SHMT1-206ENST00000579558 CCDC138Q96M89 665 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 PARVBQ9HBI1 364 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 ZNF71Q9NQZ8 489 aaPredicted RBP22.87■■□□□ 1.25
SHMT1-206ENST00000579558 ENAMQ9NRM1 1142 aa22.87■■□□□ 1.25
SHMT1-206ENST00000579558 UTP6Q9NYH9 597 aaKnown RBP22.87■■□□□ 1.25
SHMT1-206ENST00000579558 STOX2Q9P2F5 926 aaPredicted RBP22.87■■□□□ 1.25
SHMT1-206ENST00000579558 LOC105369274A0A096LPK9 316 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 IGKV1-8A0A0C4DH67 115 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 LOC102723532A0A0G2JNH3 316 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 FITM1A5D6W6 292 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 ARGFXA6NJG6 315 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 MKRN2OSH3BPM6 223 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 TSPAN12O95859 305 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 EIF2S1P05198 315 aaKnown RBP22.86■■□□□ 1.25
SHMT1-206ENST00000579558 CD63P08962 238 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 ABATP80404 500 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 FAM214AQ32MH5 1076 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 FBXO42Q6P3S6 717 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 PRICKLE2Q7Z3G6 844 aa22.86■■□□□ 1.25
SHMT1-206ENST00000579558 ZC3HC1Q86WB0 502 aaKnown RBP22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms