RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	NELFE	P18615	380 aa	Known RBP	12.67	□□□□□ -0.38
SF1-206	ENST00000413725	GGT5	P36269	586 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	MLLT3	P42568	568 aa	Predicted RBP	12.67	□□□□□ -0.38
SF1-206	ENST00000413725	SLC6A12	P48065	614 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	LSS	P48449	732 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	HSPA7	P48741	367 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	FOXK2	Q01167	660 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	PRDX1	Q06830	199 aa	Known RBP	12.67	□□□□□ -0.38
SF1-206	ENST00000413725	SETDB1	Q15047	1291 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	PFKFB4	Q16877	469 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	KIAA1614	Q5VZ46	1190 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	C16orf46	Q6P387	395 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	RAB11FIP2	Q7L804	512 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	ERMP1	Q7Z2K6	904 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	LRRC70	Q7Z2Q7	622 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	THOC6	Q86W42	341 aa	Known RBP	12.67	□□□□□ -0.38
SF1-206	ENST00000413725	C17orf64	Q86WR6	236 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	FAM129C	Q86XR2	697 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	KLHDC8A	Q8IYD2	350 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	GOLGA6L1	Q8N7Z2	621 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	BANP	Q8N9N5	519 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	WDR36	Q8NI36	951 aa	Known RBP	12.67	□□□□□ -0.38
SF1-206	ENST00000413725	UBTD2	Q8WUN7	234 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	ZUFSP	Q96AP4	578 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	TCTN2	Q96GX1	697 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	SLC41A2	Q96JW4	573 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	TMEM79	Q9BSE2	394 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	KLHL25	Q9H0H3	589 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	ACBD3	Q9H3P7	528 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	TMBIM4	Q9HC24	238 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	PDE7B	Q9NP56	450 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	ANKMY1	Q9P2S6	941 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	MID2	Q9UJV3	735 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	BTRC	Q9Y297	605 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	DYRK1B	Q9Y463	629 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	LOXL2	Q9Y4K0	774 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	TNPO3	Q9Y5L0	923 aa	Known RBP	12.67	□□□□□ -0.38
SF1-206	ENST00000413725	AHCTF1	Q8WYP5	2266 aa		12.67	□□□□□ -0.38
SF1-206	ENST00000413725	TARM1	B6A8C7	271 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	STX16-NPEPL1	H3BU86	382 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	AGRP	O00253	132 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	STX16	O14662	325 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	PLD2	O14939	933 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	TAPBP	O15533	448 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	KLK8	O60259	260 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	CCNT2	O60583	730 aa	Known RBP	12.66	□□□□□ -0.38
SF1-206	ENST00000413725	JMJD7	P0C870	316 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	MAG	P20916	626 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	HRH2	P25021	359 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	GRIA3	P42263	894 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	ZXDC	Q2QGD7	858 aa	Predicted RBP	12.66	□□□□□ -0.38
SF1-206	ENST00000413725	C18orf21	Q32NC0	220 aa	Predicted RBP	12.66	□□□□□ -0.38
SF1-206	ENST00000413725	TNFAIP8L3	Q5GJ75	292 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	C3orf38	Q5JPI3	329 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	FIGLA	Q6QHK4	219 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	CDHR3	Q6ZTQ4	885 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	FAM20C	Q8IXL6	584 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	D2HGDH	Q8N465	521 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	PTGR2	Q8N8N7	351 aa	Predicted RBP	12.66	□□□□□ -0.38
SF1-206	ENST00000413725	CCDC63	Q8NA47	563 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	RDH11	Q8TC12	318 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	ZBTB9	Q96C00	473 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	DPH7	Q9BTV6	452 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	CAPS2	Q9BXY5	557 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	CD244	Q9BZW8	370 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	CHRNA10	Q9GZZ6	450 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	FANCE	Q9HB96	536 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	SSU72	Q9NP77	194 aa	Known RBP	12.66	□□□□□ -0.38
SF1-206	ENST00000413725	SLC6A20	Q9NP91	592 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	DNAJC11	Q9NVH1	559 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	OPTC	Q9UBM4	332 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	SNX7	Q9UNH6	387 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	SATB2	Q9UPW6	733 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	SLC22A14	Q9Y267	594 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	NEUROG3	Q9Y4Z2	214 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	KLK4	Q9Y5K2	254 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	ACTL7B	Q9Y614	415 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	KCNE2	Q9Y6J6	123 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	SDK2	Q58EX2	2172 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	SCN3A	Q9NY46	2000 aa		12.66	□□□□□ -0.38
SF1-206	ENST00000413725	FER1L5	A0AVI2	2057 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	EFCAB7	A8K855	629 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725		K7EPI3	171 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	PLIN3	O60664	434 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	SPAG7	O75391	227 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	PROC	P04070	461 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	MYL2	P10916	166 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	NPPB	P16860	134 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	ATP5F1	P24539	256 aa	Predicted RBP	12.65	□□□□□ -0.38
SF1-206	ENST00000413725	GDF5	P43026	501 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	PIK3CG	P48736	1102 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	AGTR2	P50052	363 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	NFKB2	Q00653	900 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	ACY1	Q03154	408 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	CDC16	Q13042	620 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	PCBP2	Q15366	365 aa	Known RBP eCLIP	12.65	□□□□□ -0.38	3e-11	■■□□□ 11.8
SF1-206	ENST00000413725	PDK4	Q16654	411 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	FBXO48	Q5FWF7	155 aa		12.65	□□□□□ -0.38
SF1-206	ENST00000413725	ZC3H12B	Q5HYM0	836 aa	Known RBP	12.65	□□□□□ -0.38
SF1-206	ENST00000413725	METTL2B	Q6P1Q9	378 aa	Known RBP	12.65	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms