RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 DPY19L3Q6ZPD9 716 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 SH3KBP1Q96B97 665 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 NRBF2Q96F24 287 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 TMEM169Q96HH4 297 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 HIST1H2AHQ96KK5 128 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 CDK5RAP1Q96SZ6 601 aaKnown RBP20.73■□□□□ 0.91
TRIM28-201ENST00000253024 HIST1H2AJQ99878 128 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 H2AFJQ9BTM1 129 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 RAD21L1Q9H4I0 556 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 ATP13A3Q9H7F0 1226 aa20.73■□□□□ 0.91
TRIM28-201ENST00000253024 H0YAE9 185 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 YY2O15391 372 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 ACPPP15309 386 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 PTSQ03393 145 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 ADHFE1Q8IWW8 467 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 TMEFF2Q9UIK5 374 aaPredicted RBP20.72■□□□□ 0.91
TRIM28-201ENST00000253024 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP20.72■□□□□ 0.91
TRIM28-201ENST00000253024 ORC6Q9Y5N6 252 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 ZNF821O75541 412 aaPredicted RBP20.72■□□□□ 0.91
TRIM28-201ENST00000253024 IDUAP35475 653 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 GP2P55259 537 aaKnown RBP20.72■□□□□ 0.91
TRIM28-201ENST00000253024 NCS1P62166 190 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 SYT16Q17RD7 645 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 GOLM1Q8NBJ4 401 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 ADAMTS16Q8TE57 1224 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 ELMO1Q92556 727 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 RBM4BQ9BQ04 359 aaKnown RBP20.72■□□□□ 0.91
TRIM28-201ENST00000253024 RBM4Q9BWF3 364 aaKnown RBP20.72■□□□□ 0.91
TRIM28-201ENST00000253024 KIF17Q9P2E2 1029 aa20.72■□□□□ 0.91
TRIM28-201ENST00000253024 FPGTO14772 594 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 COX7A2P14406 83 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 ISL1P61371 349 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 EMX1Q04741 257 aaPredicted RBP20.71■□□□□ 0.91
TRIM28-201ENST00000253024 INO80DQ53TQ3 878 aaPredicted RBP20.71■□□□□ 0.91
TRIM28-201ENST00000253024 GPR153Q6NV75 609 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 TMEM132CQ8N3T6 1108 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 RAPGEFL1Q9UHV5 662 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 EBLN1P0CF75 366 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 POU2F1P14859 743 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 SERPINA4P29622 427 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 OR1E2P47887 323 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 Q6ZVL8 140 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 GAREM2Q75VX8 874 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 ZNF554Q86TJ5 538 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 PYURFQ96I23 114 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 SLC32A1Q9H598 525 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 CWH43Q9H720 699 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 GORASP2Q9H8Y8 452 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 AASDHPPTQ9NRN7 309 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 B4GALT6Q9UBX8 382 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 SRRDQ9UH36 339 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 C3orf18Q9UK00 162 aa20.71■□□□□ 0.91
TRIM28-201ENST00000253024 SAMHD1Q9Y3Z3 626 aaKnown RBP20.71■□□□□ 0.91
TRIM28-201ENST00000253024 TMEM247A6NEH6 219 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 VIPP01282 170 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 NUDT6P53370 316 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 CYP4F2P78329 520 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 DNASE1L3Q13609 305 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 HKDC1Q2TB90 917 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 XKR6Q5GH73 641 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 IRAK1BP1Q5VVH5 260 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 AHSA2Q719I0 299 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 SLCO6A1Q86UG4 719 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 TRIM74Q86UV6 250 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 DCAF4L2Q8NA75 395 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 CYB5D2Q8WUJ1 264 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 CPPED1Q9BRF8 314 aaPredicted RBP20.7■□□□□ 0.9
TRIM28-201ENST00000253024 MIR1-1HGQ9H1L0 117 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 SH3BP4Q9P0V3 963 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 PSME2Q9UL46 239 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 TRIM64A6NGJ6 449 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 CFAP99D6REC4 459 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 CLIC1O00299 241 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 SEC14L2O76054 403 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 LAMP1P11279 417 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 FUT4P22083 530 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 DAPP51397 102 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 AP1S1P61966 158 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 MEF2AQ02078 507 aaPredicted RBP20.7■□□□□ 0.9
TRIM28-201ENST00000253024 IRF8Q02556 426 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 CDK5R2Q13319 367 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 PLEKHG6Q3KR16 790 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 TTLL9Q3SXZ7 439 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 IGFN1Q86VF2 1251 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 ZNF540Q8NDQ6 660 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 ABHD11Q8NFV4 315 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 BORCS5Q969J3 196 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 PDLIM5Q96HC4 596 aaKnown RBP20.7■□□□□ 0.9
TRIM28-201ENST00000253024 HCFC1R1Q9NWW0 138 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 SPEGQ15772 3267 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 C16orf96A6NNT2 1141 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 IGSF6O95976 241 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 HLA-FP30511 346 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 ZNF829Q3KNS6 432 aaPredicted RBP20.7■□□□□ 0.9
TRIM28-201ENST00000253024 UAP1L1Q3KQV9 507 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 PAGE2BQ5JRK9 111 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 HORMAD1Q86X24 394 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 NRTNQ99748 197 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 TMEM165Q9HC07 324 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 SIRT5Q9NXA8 310 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms