RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TNFAIP8O95379 198 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 JUPP14923 745 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 OXTRP30559 389 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 MAZP56270 477 aaKnown RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 CDK3Q00526 305 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 HHEXQ03014 270 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 PRKCQQ04759 706 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 PHKG1Q16816 387 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 MANEALQ5VSG8 457 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 IYDQ6PHW0 289 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 ISLR2Q6UXK2 745 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 DNAJC11Q9NVH1 559 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 FADS3Q9Y5Q0 445 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 PRSS21Q9Y6M0 314 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 TMEM233B4DJY2 109 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 CAPN1P07384 714 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 BPGMP07738 259 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 JMJD7P0C870 316 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 HGFP14210 728 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 PVRP15151 417 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 AOC1P19801 751 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 OGNP20774 298 aaKnown RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 EPHA5P54756 1037 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 SRP54P61011 504 aaKnown RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 HPCAP84074 193 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 PNCKQ6P2M8 343 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 GKN2Q86XP6 184 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 KRT78Q8N1N4 520 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 AADATQ8N5Z0 425 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 TRIML2Q8N7C3 387 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 OLFM1Q99784 485 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 EBF4Q9BQW3 602 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 MRPS26Q9BYN8 205 aaKnown RBP10.04□□□□□ -0.8
COL6A3-205ENST00000392004 DPY30Q9C005 99 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 EQTNQ9NQ60 294 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 ADAMTS6Q9UKP5 1117 aa10.04□□□□□ -0.8
COL6A3-205ENST00000392004 ZNF638Q14966 1978 aaKnown RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 PIPSLA2A3N6 862 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 RGSL1A5PLK6 1076 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 TMEM221A6NGB7 291 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 M0R296 226 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 BIRC5O15392 142 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 C1SP09871 688 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 KCNK10P57789 538 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 PAGE2BQ5JRK9 111 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 ZNF621Q6ZSS3 439 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 ZSWIM9Q86XI8 627 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 PIWIL2Q8TC59 973 aaKnown RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 DNASE1L2Q92874 299 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 DTD2Q96FN9 168 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 GATA5Q9BWX5 397 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 LGR4Q9BXB1 951 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 MRPL1Q9BYD6 325 aaKnown RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 EPB41L1Q9H4G0 881 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 MRPS30Q9NP92 439 aaKnown RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 TCF7L2Q9NQB0 619 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 GIMAP2Q9UG22 337 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 DNAJC13O75165 2243 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 TDRD6O60522 2096 aaKnown RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 UBDO15205 165 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 IPO13O94829 963 aaKnown RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 S1PR4O95977 384 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 ATXN1LP0C7T5 689 aaKnown RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 ACRV1P26436 265 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 CSTF2P33240 577 aaKnown RBP eCLIP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 SPEM2Q0P670 501 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 LEXMQ3ZCV2 418 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 TCEAL6Q6IPX3 200 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 CDHR3Q6ZTQ4 885 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 SPEM1Q8N4L4 309 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 TRAM1L1Q8N609 369 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 TCEAL3Q969E4 200 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 PLEKHG4BQ96PX9 1271 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 HAUS8Q9BT25 410 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 TBCDQ9BTW9 1192 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 FGF22Q9HCT0 170 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 TIMMDC1Q9NPL8 285 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 ZNF490Q9ULM2 529 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 DMTF1Q9Y222 760 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 TNPO3Q9Y5L0 923 aaKnown RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 SHROOM3Q8TF72 1996 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 GLOD5A6NK44 160 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 OR10H2O60403 315 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 RPL34P49207 117 aaKnown RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 ID2Q02363 134 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 SUZ12Q15022 739 aaKnown RBP10.03□□□□□ -0.8
COL6A3-205ENST00000392004 ADRM1Q16186 407 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 AGTRAPQ6RW13 159 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 FAM129BQ96TA1 746 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 AURKCQ9UQB9 309 aa10.03□□□□□ -0.8
COL6A3-205ENST00000392004 KRBA1A5PL33 1030 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 C5orf58C9J3I9 102 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 OLFM2O95897 454 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 MAGEA8P43361 318 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 PRIM2P49643 509 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 NUDT2P50583 147 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 C1orf189Q5VU69 101 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 FAM180BQ6P0A1 224 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 SHISA6Q6ZSJ9 500 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms