RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 UGT8Q16880 541 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 LONRF1Q17RB8 773 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 TTLL9Q3SXZ7 439 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 PRAMEF17Q5VTA0 474 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 IZUMO3Q5VZ72 239 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 ZNF470Q6ECI4 717 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 SYTL1Q8IYJ3 562 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 C2orf73Q8N5S3 287 aaPredicted RBP11.94□□□□□ -0.5
SS18-225ENST00000585121 ZBTB2Q8N680 514 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 NAT8LQ8N9F0 302 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 SLC38A9Q8NBW4 561 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 THAP4Q8WY91 577 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 RUNDC3BQ96NL0 473 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 AKIRIN1Q9H9L7 192 aaPredicted RBP11.94□□□□□ -0.5
SS18-225ENST00000585121 C20orf96Q9NUD7 363 aaPredicted RBP11.94□□□□□ -0.5
SS18-225ENST00000585121 PCMTD2Q9NV79 361 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 PYCARDQ9ULZ3 195 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 SNX7Q9UNH6 387 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 PLCL2Q9UPR0 1127 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 NEU2Q9Y3R4 380 aa11.94□□□□□ -0.5
SS18-225ENST00000585121 NIPSNAP2O75323 286 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 USP1O94782 785 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 C1orf105O95561 183 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 CD63P08962 238 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 TLDC1Q6P9B6 456 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 CNSTQ6PJW8 725 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 ZNF517Q6ZMY9 492 aaPredicted RBP11.93□□□□□ -0.5
SS18-225ENST00000585121 ATG14Q6ZNE5 492 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 TMEM135Q86UB9 458 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 TAX1BP1Q86VP1 789 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 LINC01555Q8NAE3 123 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 FLVCR1-AS1Q8TAF5 88 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 DENND1AQ8TEH3 1009 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 IL17FQ96PD4 163 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 NLNQ9BYT8 704 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 FAM60AQ9NP50 221 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 FAM114A2Q9NRY5 505 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 TXLNGQ9NUQ3 528 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 CIDEBQ9UHD4 219 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 GPN3Q9UHW5 284 aaPredicted RBP11.93□□□□□ -0.5
SS18-225ENST00000585121 SRPK3Q9UPE1 567 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 PADI2Q9Y2J8 665 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 KCNMB2Q9Y691 235 aa11.93□□□□□ -0.5
SS18-225ENST00000585121 ZSCAN9O15535 394 aaPredicted RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 RFPL1O75677 317 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 PEBP1P30086 187 aaKnown RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 RORAP35398 523 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 MAGEA3P43357 314 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 BDKRB1P46663 353 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 RPS18P62269 152 aaKnown RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 ZIC1Q15915 447 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 DEFB110Q30KQ9 67 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 ZNF789Q5FWF6 425 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 ZC3H12BQ5HYM0 836 aaKnown RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 FIGLAQ6QHK4 219 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 SYDE1Q6ZW31 735 aaPredicted RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 CENPUQ71F23 418 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 DNAJC22Q8N4W6 341 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 ENDOVQ8N8Q3 282 aaKnown RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.92□□□□□ -0.5
SS18-225ENST00000585121 PROKR1Q8TCW9 393 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 DLG3Q92796 817 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 FAM136AQ96C01 138 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 ABHD17AQ96GS6 310 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 CAPZA3Q96KX2 299 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 RUFY1Q96T51 708 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 NAPGQ99747 312 aaPredicted RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 FAM167BQ9BTA0 163 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 NDC1Q9BTX1 674 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 DHRS4Q9BTZ2 278 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 SPRTNQ9H040 489 aaPredicted RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 DDX47Q9H0S4 455 aaKnown RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 ZNF71Q9NQZ8 489 aaPredicted RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 FBXO6Q9NRD1 293 aaPredicted RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 IL1RAPL1Q9NZN1 696 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 SPATA7Q9P0W8 599 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 KLHL42Q9P2K6 505 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 PCYOX1Q9UHG3 505 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 TSR3Q9UJK0 312 aaKnown RBP11.92□□□□□ -0.5
SS18-225ENST00000585121 NFS1Q9Y697 457 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 COMMD10Q9Y6G5 202 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 BOD1L1Q8NFC6 3051 aa11.92□□□□□ -0.5
SS18-225ENST00000585121 ZCWPW2A0A1B0GU75 182 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 ZNF839A8K0R7 811 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 DNALI1O14645 258 aaPredicted RBP11.91□□□□□ -0.5
SS18-225ENST00000585121 TTC4O95801 387 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 CATP04040 527 aaKnown RBP11.91□□□□□ -0.5
SS18-225ENST00000585121 FURINP09958 794 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 PGAM1P18669 254 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 MAGP20916 626 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 PAFAH1B1P43034 410 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 PMS2P54278 862 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 DCDP81605 110 aaKnown RBP11.91□□□□□ -0.5
SS18-225ENST00000585121 CTBP1Q13363 440 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 PTK6Q13882 451 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 GRB7Q14451 532 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 NAA25Q14CX7 972 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 PTCHD3Q3KNS1 767 aa11.91□□□□□ -0.5
SS18-225ENST00000585121 LACTB2Q53H82 288 aaPredicted RBP11.91□□□□□ -0.5
SS18-225ENST00000585121 RNASEH2BQ5TBB1 312 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms