RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 GLT6D1Q7Z4J2 308 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 DAAM2Q86T65 1068 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 PRSS58Q8IYP2 241 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 ADGRF3Q8IZF5 1079 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 HM13Q8TCT9 377 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 ZNF398Q8TD17 642 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 DTX3LQ8TDB6 740 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 BLOC1S5Q8TDH9 187 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 IMP4Q96G21 291 aaKnown RBP10.62□□□□□ -0.71
VPS53-207ENST00000570510 SPSB2Q99619 263 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 CEP41Q9BYV8 373 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 SLC25A51Q9H1U9 297 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 SLC22A11Q9NSA0 550 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 CCM2LQ9NUG4 571 aaPredicted RBP10.62□□□□□ -0.71
VPS53-207ENST00000570510 IL1RAPL1Q9NZN1 696 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 PPT2Q9UMR5 302 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 SPO11Q9Y5K1 396 aa10.62□□□□□ -0.71
VPS53-207ENST00000570510 GOLGA6L6A8MZA4 724 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 ISM1B1AKI9 464 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 CFAP99D6REC4 459 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 STX7O15400 261 aaKnown RBP10.61□□□□□ -0.71
VPS53-207ENST00000570510 TTI1O43156 1089 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 HCRTR1O43613 425 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 IPO7O95373 1038 aaKnown RBP10.61□□□□□ -0.71
VPS53-207ENST00000570510 WDPCPO95876 746 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 SHMT2P34897 504 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 ZNF75DP51815 510 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 IFI35P80217 286 aaPredicted RBP10.61□□□□□ -0.71
VPS53-207ENST00000570510 PMP22Q01453 160 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 ALDH6A1Q02252 535 aaKnown RBP10.61□□□□□ -0.71
VPS53-207ENST00000570510 GBE1Q04446 702 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 ZBTB17Q13105 803 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 CEBPEQ15744 281 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 ZIC1Q15915 447 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 NDUFAF7Q7L592 441 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 NLRP9Q7RTR0 991 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 LILRA3Q8N6C8 439 aaPredicted RBP10.61□□□□□ -0.71
VPS53-207ENST00000570510 CNTD1Q8N815 330 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 TC2NQ8N9U0 490 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 TTC29Q8NA56 475 aaPredicted RBP10.61□□□□□ -0.71
VPS53-207ENST00000570510 LRRN4CLQ8ND94 238 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 SPATA22Q8NHS9 363 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 AGAP11Q8TF27 550 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 NAT14Q8WUY8 206 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 MIEF2Q96C03 454 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 C8orf44Q96CB5 159 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 ZNF670Q9BS34 389 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 CHRNA10Q9GZZ6 450 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 SLC26A1Q9H2B4 701 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 VPS37BQ9H9H4 285 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 CUTCQ9NTM9 273 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 EURLQ9NYK6 297 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 STMN3Q9NZ72 180 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 UBP1Q9NZI7 540 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 HACD3Q9P035 362 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 CTTNBP2NLQ9P2B4 639 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 TNFRSF10DQ9UBN6 386 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 CTSFQ9UBX1 484 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 C3orf18Q9UK00 162 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 HEY1Q9Y5J3 304 aa10.61□□□□□ -0.71
VPS53-207ENST00000570510 OR5H15A6NDH6 313 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 BTNL10A8MVZ5 291 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 NPIPA5E9PKD4 350 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 H3BMH7 237 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 PRRG2O14669 202 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 DSCR3O14972 297 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 BUD23O43709 281 aaKnown RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 KDM1AO60341 852 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 BMP10O95393 424 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 TSPAN12O95859 305 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 SERPINA7P05543 415 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 CTSBP07858 339 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 OR1D4P47884 311 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 CD151P48509 253 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 SLC25A11Q02978 314 aaKnown RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 ZNF33BQ06732 778 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 KLC1Q07866 573 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 FOXD4Q12950 439 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 DPYSL3Q14195 570 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 GRM7Q14831 915 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 SPA17Q15506 151 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 FAM214AQ32MH5 1076 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 BCL7AQ4VC05 210 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 ZNF766Q5HY98 468 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 HIBCHQ6NVY1 386 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 C3P1Q6ZMU1 363 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 NCCRP1Q6ZVX7 275 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 Q71RC1 249 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 MCATQ8IVS2 390 aaKnown RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 SLC25A41Q8N5S1 370 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 METTL27Q8N6F8 245 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 THAP3Q8WTV1 239 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 NRGNQ92686 78 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 TFGQ92734 400 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 LINC00615Q96LM1 132 aaPredicted RBP10.6□□□□□ -0.71
VPS53-207ENST00000570510 GPR137Q96N19 417 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 OR2A14Q96R47 310 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 NRTNQ99748 197 aa10.6□□□□□ -0.71
VPS53-207ENST00000570510 YIPF2Q9BWQ6 316 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms