RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 SLITRK5O94991 958 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ADH1BP00325 375 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 STAG3L2P0CL84 134 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ATP5F1P24539 256 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 DNAJA1P31689 397 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 BST2Q10589 180 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 HEPACAMQ14CZ8 416 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 LARS2Q15031 903 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 GRIK5Q16478 980 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 FBXO47Q5MNV8 452 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CELF3Q5SZQ8 465 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 DRICH1Q6PGQ1 229 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ARL9Q6T311 187 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TMEM270Q6UE05 265 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 KCNT2Q6UVM3 1135 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 RAB11FIP2Q7L804 512 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 FAM228AQ86W67 206 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 FAM133AQ8N9E0 248 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 NARS2Q96I59 477 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 OPA3Q9H6K4 179 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SAMSN1Q9NSI8 373 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 WWOXQ9NZC7 414 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 DLGAP4Q9Y2H0 992 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 FBXO7Q9Y3I1 522 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 BORCS7-ASMTA0A0B4J1R7 106 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PDYNP01213 254 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 HRGP04196 525 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 UBCP0CG48 685 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 IRF2P14316 349 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PGAM1P18669 254 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PAX7P23759 505 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CCNCP24863 283 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ADH6P28332 368 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 GPC1P35052 558 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 DGKQP52824 942 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 KCNJ2P63252 427 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ELF3P78545 371 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF543Q08ER8 600 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 POU4F2Q12837 409 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 MPP2Q14168 576 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 DHCR24Q15392 516 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 UBE2SQ16763 222 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ST3GAL2Q16842 350 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 VITQ6UXI7 678 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ARID3BQ8IVW6 561 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CMTR2Q8IYT2 770 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 FMR1NBQ8N0W7 255 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CFAP52Q8N1V2 620 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 KDM1BQ8NB78 822 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 BPIFB1Q8TDL5 484 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 C22orf15Q8WYQ4 148 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ELMO3Q96BJ8 720 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 BMFQ96LC9 184 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ZSWIM1Q9BR11 485 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 MMP27Q9H306 513 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 IL1RL2Q9HB29 575 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 FAM49BQ9NUQ9 324 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 RNF150Q9ULK6 438 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ADAMTS5Q9UNA0 930 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PCDHAC2Q9Y5I4 1007 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 BRWD3Q6RI45 1802 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 NSG1A0A0A6YYJ2 146 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 TSPAN3O60637 253 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 PRG2P13727 222 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 BMPR1AP36894 532 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 NSG1P42857 185 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 CRISP1P54107 249 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 GPX6P59796 221 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 ORC1Q13415 861 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 CBX2Q14781 532 aaPredicted RBP3.22□□□□□ -1.89
CSMD3-202ENST00000339701 CHI3L2Q15782 390 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 MAPKAPK3Q16644 382 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 TIGD6Q17RP2 521 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.22□□□□□ -1.89
CSMD3-202ENST00000339701 SDR16C5Q8N3Y7 309 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 OR4A15Q8NGL6 344 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 OR6Y1Q8NGX8 325 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 FEZF2Q8TBJ5 459 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 MBOAT7Q96N66 472 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 PNKPQ96T60 521 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 YIPF4Q9BSR8 244 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 TMEM138Q9NPI0 162 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF446Q9NWS9 450 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF221Q9UK13 617 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 SNX8Q9Y5X2 465 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 DOCK7Q96N67 2140 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 LTBP1Q14766 1721 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 FAM172BPA6NC97 362 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 WASHC1A8K0Z3 465 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 FADS2P1A8MWK0 482 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 WASH3PC4AMC7 463 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 SULT1C2O00338 296 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 AK1P00568 194 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 GLAP06280 429 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 CHRNGP07510 517 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 ELFN1P0C7U0 828 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 ETFAP13804 333 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 CDK2P24941 298 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 CDC25AP30304 524 aa3.22□□□□□ -1.89
CSMD3-202ENST00000339701 OR1E1P30953 314 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms