RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CLMPQ9H6B4 373 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 SFXN1Q9H9B4 322 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 TCF20Q9UGU0 1960 aaKnown RBP12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 TMEM202A6NGA9 273 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 ARHGEF33A8MVX0 844 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 UGDHO60701 494 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 CATP04040 527 aaKnown RBP12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 PRPS2P11908 318 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 FCGR1AP12314 374 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 BCKDHAP12694 445 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 HLA-EP13747 358 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 PRPH2P23942 346 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 FSHRP23945 695 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 FASP25445 335 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 CTSCP53634 463 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 PFN3P60673 137 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 ERVK-21P61565 698 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 NRF1Q16656 503 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 AAK1Q2M2I8 961 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 TMEM220Q6QAJ8 160 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 ADGRG5Q8IZF4 528 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 CMTM7Q96FZ5 175 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 PPP1R16AQ96I34 528 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 ZNF597Q96LX8 424 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 CCDC138Q96M89 665 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 FOPNLQ96NB1 174 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 CIB1Q99828 191 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 ZCCHC2Q9C0B9 1178 aaKnown RBP12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 EPHX3Q9H6B9 360 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 THG1LQ9NWX6 298 aaKnown RBP12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 GEMIN8Q9NWZ8 242 aaKnown RBP12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 MAGEL2Q9UJ55 1249 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 TMED5Q9Y3A6 229 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 PCDHB3Q9Y5E6 796 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 MUC22E2RYF6 1773 aaPredicted RBP12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 ATG2AQ2TAZ0 1938 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 SLC5A10A0PJK1 596 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 SERTM1A2A2V5 107 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 HEPACAM2A8MVW5 462 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 AP1G1O43747 822 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 PGRP06401 933 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 JUPP14923 745 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 NCK1P16333 377 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 PREPP48147 710 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 NRIP1P48552 1158 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 NEK2P51955 445 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 RPS14P62263 151 aaKnown RBP12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 MESP2Q0VG99 397 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 CHIT1Q13231 466 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 ELAVL3Q14576 367 aaKnown RBP12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 FXNQ16595 210 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 SPANXN4Q5MJ08 99 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 C6orf52Q5T4I8 152 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 LIPJQ5W064 366 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 FRG2Q64ET8 278 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 SUSD1Q6UWL2 747 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 ZBTB49Q6ZSB9 765 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 RALGPS2Q86X27 583 aaPredicted RBP12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 TRPV3Q8NET8 790 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 NUDT8Q8WV74 236 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 GTF2H4Q92759 462 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 ARRDC3Q96B67 414 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 NUS1Q96E22 293 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 CNBD2Q96M20 576 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 GBP5Q96PP8 586 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 FRG2BQ96QU4 278 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 OR52E6Q96RD3 313 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 AGPAT4Q9NRZ5 378 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 ANAPC2Q9UJX6 822 aa12.59□□□□□ -0.39
SPTLC1-201ENST00000262554 KIAA1549LQ6ZVL6 1849 aa12.58□□□□□ -0.39
SPTLC1-201ENST00000262554 TCRBV5S2A0A599 114 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 KRT87PA6NCN2 255 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 CLGNO14967 610 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 GMNNO75496 209 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 PAPLNO95428 1278 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 PBLDP30039 288 aaPredicted RBP12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 OXTRP30559 389 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 CLCN2P51788 898 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 METAP1P53582 386 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 CLDN8P56748 225 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 OR4D2P58180 307 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 MTPNP58546 118 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 PLIN5Q00G26 463 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 IRF8Q02556 426 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 ZNF33BQ06732 778 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 MAP7Q14244 749 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 ZNF234Q14588 700 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 PDGFRLQ15198 375 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 DUSP6Q16828 381 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 GAB4Q2WGN9 574 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 GLYATQ6IB77 296 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 ZNF765Q7L2R6 523 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 THOC6Q86W42 341 aaKnown RBP12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 SLC22A15Q8IZD6 547 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 AADATQ8N5Z0 425 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 KRTCAP2Q8N6L1 136 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 DNAJB8Q8NHS0 232 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 FGF13Q92913 245 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 NSMCE2Q96MF7 247 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms