Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm8396-201ENSMUST00000057361 823 ntBASIC18.76■□□□□ 0.59
Scn11aQ9R053 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn11aQ9R053 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn11aQ9R053 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Gm15427-201ENSMUST00000117288 531 ntBASIC18.73■□□□□ 0.59
Scn11aQ9R053 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Gm14722-201ENSMUST00000118943 689 ntBASIC18.73■□□□□ 0.59
Scn11aQ9R053 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC18.73■□□□□ 0.59
Scn11aQ9R053 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Gm45747-201ENSMUST00000212203 999 ntBASIC18.73■□□□□ 0.59
Scn11aQ9R053 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Gm43072-201ENSMUST00000200283 1671 ntBASIC18.73■□□□□ 0.59
Scn11aQ9R053 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Gm8318-201ENSMUST00000182954 872 ntBASIC18.73■□□□□ 0.59
Scn11aQ9R053 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC18.73■□□□□ 0.59
Scn11aQ9R053 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC18.72■□□□□ 0.59
Scn11aQ9R053 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
Scn11aQ9R053 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC18.72■□□□□ 0.59
Scn11aQ9R053 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn11aQ9R053 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn11aQ9R053 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.71■□□□□ 0.59
Scn11aQ9R053 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn11aQ9R053 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn11aQ9R053 Gm12892-201ENSMUST00000117367 1146 ntBASIC18.71■□□□□ 0.59
Scn11aQ9R053 Gm12008-201ENSMUST00000117791 755 ntBASIC18.71■□□□□ 0.59
Scn11aQ9R053 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC18.71■□□□□ 0.59
Scn11aQ9R053 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn11aQ9R053 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Scn11aQ9R053 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Scn11aQ9R053 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC18.71■□□□□ 0.59
Scn11aQ9R053 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Scn11aQ9R053 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC18.71■□□□□ 0.59
Scn11aQ9R053 Gm44492-201ENSMUST00000197012 141 ntBASIC18.71■□□□□ 0.59
Scn11aQ9R053 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms