Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC17.11■□□□□ 0.33
Cpsf3Q9QXK7 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.11■□□□□ 0.33
Cpsf3Q9QXK7 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Cpsf3Q9QXK7 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cpsf3Q9QXK7 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cpsf3Q9QXK7 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cpsf3Q9QXK7 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Cpsf3Q9QXK7 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cpsf3Q9QXK7 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cpsf3Q9QXK7 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm11452-201ENSMUST00000122376 690 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm8825-201ENSMUST00000182565 998 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm4518-201ENSMUST00000182638 718 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm8655-201ENSMUST00000221159 852 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.1■□□□□ 0.33
Cpsf3Q9QXK7 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Gm8097-201ENSMUST00000117903 829 ntBASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Gm7461-201ENSMUST00000058918 827 ntBASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cpsf3Q9QXK7 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cpsf3Q9QXK7 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Cpsf3Q9QXK7 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cpsf3Q9QXK7 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cpsf3Q9QXK7 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cpsf3Q9QXK7 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cpsf3Q9QXK7 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cpsf3Q9QXK7 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cpsf3Q9QXK7 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms