Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC14.33□□□□□ -0.11
Trem1Q9JKE2 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC14.33□□□□□ -0.11
Trem1Q9JKE2 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trem1Q9JKE2 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trem1Q9JKE2 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Gm10418-201ENSMUST00000100943 576 ntBASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trem1Q9JKE2 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Tfap2a-209ENSMUST00000225180 1828 ntBASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trem1Q9JKE2 BC037039-201ENSMUST00000192003 2205 ntBASIC14.31□□□□□ -0.12
Trem1Q9JKE2 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Efs-202ENSMUST00000227037 2540 ntBASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Gm18671-201ENSMUST00000214826 683 ntBASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Wnt10b-205ENSMUST00000226846 1204 ntBASIC14.31□□□□□ -0.12
Trem1Q9JKE2 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Gm19721-201ENSMUST00000195284 1764 ntBASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trem1Q9JKE2 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trem1Q9JKE2 Gm45504-201ENSMUST00000211407 2107 ntBASIC14.3□□□□□ -0.12
Trem1Q9JKE2 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Trem1Q9JKE2 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trem1Q9JKE2 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC14.3□□□□□ -0.12
Trem1Q9JKE2 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms