Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm8825-201ENSMUST00000182565 998 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm4518-201ENSMUST00000182638 718 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Gm2213-201ENSMUST00000197485 688 ntBASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim54Q9ERP3 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Gm14140-201ENSMUST00000119999 995 ntBASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim54Q9ERP3 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 63.4 ms