Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Gm25745-201ENSMUST00000174945 133 ntBASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 AC159301.1-201ENSMUST00000225130 1182 ntBASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Gm7461-201ENSMUST00000058918 827 ntBASIC16.3■□□□□ 0.2
Vps28Q9D1C8 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps28Q9D1C8 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps28Q9D1C8 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps28Q9D1C8 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Mir8098-201ENSMUST00000184011 137 ntBASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Gm28659-201ENSMUST00000188013 759 ntBASIC16.27■□□□□ 0.2
Vps28Q9D1C8 AC160338.1-201ENSMUST00000214232 705 ntBASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps28Q9D1C8 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Vps28Q9D1C8 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Vps28Q9D1C8 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Vps28Q9D1C8 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.19
Vps28Q9D1C8 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Vps28Q9D1C8 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Vps28Q9D1C8 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.26■□□□□ 0.19
Vps28Q9D1C8 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms