Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Smc1aQ9CU62 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Tfap2a-209ENSMUST00000225180 1828 ntBASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Smc1aQ9CU62 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 AC164629.2-201ENSMUST00000217916 270 ntBASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Smc1aQ9CU62 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Smc1aQ9CU62 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Smc1aQ9CU62 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Smc1aQ9CU62 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms