Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC16.86■□□□□ 0.29
Sf3b1Q99NB9 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Sf3b1Q99NB9 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm4609-201ENSMUST00000106443 1002 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm5138-201ENSMUST00000113842 1002 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm15191-201ENSMUST00000117933 1000 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm12182-201ENSMUST00000118655 1008 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm6184-201ENSMUST00000120403 1261 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm13882-201ENSMUST00000120886 1002 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm10284-201ENSMUST00000145057 1005 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm10481-201ENSMUST00000179228 1002 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm2574-201ENSMUST00000181051 1002 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm3200-201ENSMUST00000181493 1002 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm8825-201ENSMUST00000182565 998 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm4518-201ENSMUST00000182638 718 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm8330-201ENSMUST00000182754 1008 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm4575-201ENSMUST00000182991 1002 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm8709-201ENSMUST00000183230 1012 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm18622-201ENSMUST00000219361 595 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm10293-201ENSMUST00000076317 1002 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Gm6316-201ENSMUST00000082064 1020 ntBASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Sf3b1Q99NB9 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Sf3b1Q99NB9 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
Sf3b1Q99NB9 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Sf3b1Q99NB9 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Sf3b1Q99NB9 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Sf3b1Q99NB9 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Sf3b1Q99NB9 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Sf3b1Q99NB9 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 74.2 ms