Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm6257-201ENSMUST00000163864 910 ntBASIC16.76■□□□□ 0.27
Clp1Q99LI9 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Gm27301-201ENSMUST00000184012 127 ntBASIC16.76■□□□□ 0.27
Clp1Q99LI9 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.76■□□□□ 0.27
Clp1Q99LI9 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Gm5312-201ENSMUST00000203728 547 ntBASIC16.76■□□□□ 0.27
Clp1Q99LI9 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC16.76■□□□□ 0.27
Clp1Q99LI9 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Clp1Q99LI9 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC16.75■□□□□ 0.27
Clp1Q99LI9 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Clp1Q99LI9 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC16.74■□□□□ 0.27
Clp1Q99LI9 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Clp1Q99LI9 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.73■□□□□ 0.27
Clp1Q99LI9 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Gm13365-201ENSMUST00000121188 973 ntBASIC16.73■□□□□ 0.27
Clp1Q99LI9 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.73■□□□□ 0.27
Clp1Q99LI9 AA543401-201ENSMUST00000164248 1269 ntBASIC16.73■□□□□ 0.27
Clp1Q99LI9 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.73■□□□□ 0.27
Clp1Q99LI9 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.73■□□□□ 0.27
Clp1Q99LI9 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Clp1Q99LI9 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clp1Q99LI9 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clp1Q99LI9 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clp1Q99LI9 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clp1Q99LI9 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clp1Q99LI9 Nrn1-204ENSMUST00000224323 1779 ntBASIC16.72■□□□□ 0.27
Clp1Q99LI9 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Clp1Q99LI9 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clp1Q99LI9 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC16.72■□□□□ 0.27
Clp1Q99LI9 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clp1Q99LI9 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Clp1Q99LI9 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.72■□□□□ 0.27
Clp1Q99LI9 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Clp1Q99LI9 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Clp1Q99LI9 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms