Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Ushbp1Q8R370 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ushbp1Q8R370 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ushbp1Q8R370 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ushbp1Q8R370 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ushbp1Q8R370 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ushbp1Q8R370 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC17.83■□□□□ 0.45
Ushbp1Q8R370 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
Ushbp1Q8R370 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ushbp1Q8R370 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Gm44729-201ENSMUST00000206759 2052 ntBASIC17.83■□□□□ 0.44
Ushbp1Q8R370 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Gm42473-201ENSMUST00000201056 2291 ntBASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Gm18206-201ENSMUST00000207027 926 ntBASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 AC153526.5-201ENSMUST00000218661 2147 ntBASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC17.82■□□□□ 0.44
Ushbp1Q8R370 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Gm27525-201ENSMUST00000184465 107 ntBASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ushbp1Q8R370 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.8■□□□□ 0.44
Ushbp1Q8R370 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Ushbp1Q8R370 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ushbp1Q8R370 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms