Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn1Q8K445 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clrn1Q8K445 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn1Q8K445 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn1Q8K445 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn1Q8K445 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC15.05■□□□□ 0
Clrn1Q8K445 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC15.05■□□□□ 0
Clrn1Q8K445 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Clrn1Q8K445 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Clrn1Q8K445 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Clrn1Q8K445 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Clrn1Q8K445 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC15.05■□□□□ -0
Clrn1Q8K445 Otx2os1-206ENSMUST00000228153 787 ntBASIC15.05■□□□□ -0
Clrn1Q8K445 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC15.05■□□□□ -0
Clrn1Q8K445 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
Clrn1Q8K445 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn1Q8K445 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC15.04■□□□□ -0
Clrn1Q8K445 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC15.04■□□□□ -0
Clrn1Q8K445 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Clrn1Q8K445 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Clrn1Q8K445 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC15.04■□□□□ -0
Clrn1Q8K445 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC15.04■□□□□ -0
Clrn1Q8K445 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC15.04■□□□□ -0
Clrn1Q8K445 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC15.04■□□□□ -0
Clrn1Q8K445 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC15.04■□□□□ -0
Clrn1Q8K445 Gm7367-201ENSMUST00000057611 492 ntBASIC15.04■□□□□ -0
Clrn1Q8K445 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC15.04■□□□□ -0
Clrn1Q8K445 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC15.04■□□□□ -0
Clrn1Q8K445 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.04■□□□□ -0
Clrn1Q8K445 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Clrn1Q8K445 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
Clrn1Q8K445 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC15.03■□□□□ -0
Clrn1Q8K445 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Clrn1Q8K445 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Clrn1Q8K445 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC15.03■□□□□ -0
Clrn1Q8K445 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Clrn1Q8K445 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Clrn1Q8K445 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC15.03■□□□□ -0
Clrn1Q8K445 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clrn1Q8K445 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Clrn1Q8K445 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Clrn1Q8K445 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC15.02■□□□□ -0
Clrn1Q8K445 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Clrn1Q8K445 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC15.02■□□□□ -0
Clrn1Q8K445 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms