Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Gm9103-201ENSMUST00000119371 405 ntBASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 AC108846.1-201ENSMUST00000214531 513 ntBASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Gm42473-201ENSMUST00000201056 2291 ntBASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Brf1Q8CFK2 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Gm38327-201ENSMUST00000195852 1755 ntBASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Gm15372-201ENSMUST00000120729 834 ntBASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 AC093043.3-201ENSMUST00000226531 2273 ntBASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Brf1Q8CFK2 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Gm7935-201ENSMUST00000100555 1278 ntBASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Gm42918-201ENSMUST00000199249 1580 ntBASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Brf1Q8CFK2 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Brf1Q8CFK2 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Gm25745-201ENSMUST00000174945 133 ntBASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Brf1Q8CFK2 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms