Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Atg4aQ8C9S8 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Gm44616-201ENSMUST00000206417 1732 ntBASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Gm7935-201ENSMUST00000100555 1278 ntBASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Gm9172-201ENSMUST00000212092 954 ntBASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Atg4aQ8C9S8 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Atg4aQ8C9S8 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Atg4aQ8C9S8 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Atg4aQ8C9S8 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
Atg4aQ8C9S8 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC19.33■□□□□ 0.69
Atg4aQ8C9S8 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Atg4aQ8C9S8 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Atg4aQ8C9S8 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Atg4aQ8C9S8 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Gm9103-201ENSMUST00000119371 405 ntBASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
Atg4aQ8C9S8 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Cmtm5-203ENSMUST00000227441 610 ntBASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Atg4aQ8C9S8 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm4609-201ENSMUST00000106443 1002 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm5138-201ENSMUST00000113842 1002 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm15191-201ENSMUST00000117933 1000 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm12182-201ENSMUST00000118655 1008 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm13882-201ENSMUST00000120886 1002 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm10284-201ENSMUST00000145057 1005 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm10481-201ENSMUST00000179228 1002 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm2574-201ENSMUST00000181051 1002 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm3200-201ENSMUST00000181493 1002 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm8825-201ENSMUST00000182565 998 ntBASIC19.31■□□□□ 0.68
Atg4aQ8C9S8 Gm4518-201ENSMUST00000182638 718 ntBASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms