Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Gm11779-201ENSMUST00000118541 368 ntBASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Gm43332-201ENSMUST00000202511 1044 ntBASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 AC159093.1-201ENSMUST00000227779 380 ntBASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Sh3rf2Q8BZT2 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Gm43935-201ENSMUST00000203569 1050 ntBASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf2Q8BZT2 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Gm11594-201ENSMUST00000122313 162 ntBASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Gm37935-201ENSMUST00000192012 982 ntBASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf2Q8BZT2 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Gm14140-201ENSMUST00000119999 995 ntBASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Gm12260-201ENSMUST00000122447 411 ntBASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Gm5264-201ENSMUST00000190584 848 ntBASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Gm42670-201ENSMUST00000201816 1292 ntBASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Sh3rf2Q8BZT2 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms