Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Gm29707-201ENSMUST00000196325 491 ntBASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Gm18421-201ENSMUST00000204122 625 ntBASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ube3dQ8BX13 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Gm14464-201ENSMUST00000119658 1254 ntBASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Gm15794-201ENSMUST00000120182 631 ntBASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC14.16□□□□□ -0.14
Ube3dQ8BX13 Zkscan4-202ENSMUST00000225845 1506 ntBASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 AC115863.1-201ENSMUST00000214815 1813 ntBASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ube3dQ8BX13 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ube3dQ8BX13 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms