Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Nup98Q6PFD9 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC18.63■□□□□ 0.57
Nup98Q6PFD9 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Gm44335-201ENSMUST00000196879 141 ntBASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Gm44297-201ENSMUST00000198304 141 ntBASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Gm44346-201ENSMUST00000198851 141 ntBASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Thap2-203ENSMUST00000218989 527 ntBASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Nup98Q6PFD9 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Gm13332-201ENSMUST00000120451 1398 ntBASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC18.62■□□□□ 0.57
Nup98Q6PFD9 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup98Q6PFD9 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Nup98Q6PFD9 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup98Q6PFD9 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup98Q6PFD9 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup98Q6PFD9 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup98Q6PFD9 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup98Q6PFD9 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Nup98Q6PFD9 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nup98Q6PFD9 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Gm11745-201ENSMUST00000121669 448 ntBASIC18.6■□□□□ 0.57
Nup98Q6PFD9 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Nup98Q6PFD9 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 AC154621.1-201ENSMUST00000226155 1119 ntBASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Nup98Q6PFD9 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms