Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Gm13312-201ENSMUST00000119631 718 ntBASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Usp49Q6P9L4 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Gm27741-201ENSMUST00000185060 237 ntBASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usp49Q6P9L4 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp49Q6P9L4 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.45
Usp49Q6P9L4 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
Usp49Q6P9L4 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp49Q6P9L4 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp49Q6P9L4 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Usp49Q6P9L4 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Usp49Q6P9L4 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp49Q6P9L4 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usp49Q6P9L4 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC17.83■□□□□ 0.45
Usp49Q6P9L4 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Gm7284-201ENSMUST00000131667 944 ntBASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Otx2os1-206ENSMUST00000228153 787 ntBASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
Usp49Q6P9L4 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Mir3081-201ENSMUST00000175305 84 ntBASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Gm33142-201ENSMUST00000193913 867 ntBASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usp49Q6P9L4 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
Usp49Q6P9L4 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC17.8■□□□□ 0.44
Usp49Q6P9L4 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Usp49Q6P9L4 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp49Q6P9L4 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp49Q6P9L4 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms