Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 Gm25911-201ENSMUST00000157621 56 ntBASIC20.63■□□□□ 0.89
Trim28Q62318 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC20.63■□□□□ 0.89
Trim28Q62318 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim28Q62318 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC20.62■□□□□ 0.89
Trim28Q62318 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC20.62■□□□□ 0.89
Trim28Q62318 Gm37166-201ENSMUST00000195473 2474 ntBASIC20.62■□□□□ 0.89
Trim28Q62318 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Trim28Q62318 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Trim28Q62318 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC20.62■□□□□ 0.89
Trim28Q62318 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC20.62■□□□□ 0.89
Trim28Q62318 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Gm13597-201ENSMUST00000121239 375 ntBASIC20.62■□□□□ 0.89
Trim28Q62318 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC20.62■□□□□ 0.89
Trim28Q62318 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Trim28Q62318 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC20.62■□□□□ 0.89
Trim28Q62318 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Trim28Q62318 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
Trim28Q62318 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim28Q62318 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Trim28Q62318 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC20.61■□□□□ 0.89
Trim28Q62318 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim28Q62318 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Trim28Q62318 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
Trim28Q62318 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim28Q62318 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Trim28Q62318 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim28Q62318 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
Trim28Q62318 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC20.61■□□□□ 0.89
Trim28Q62318 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC20.61■□□□□ 0.89
Trim28Q62318 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Trim28Q62318 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim28Q62318 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim28Q62318 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Trim28Q62318 Grk6-207ENSMUST00000225925 2769 ntBASIC20.61■□□□□ 0.89
Trim28Q62318 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim28Q62318 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim28Q62318 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim28Q62318 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim28Q62318 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trim28Q62318 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Trim28Q62318 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim28Q62318 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim28Q62318 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC20.6■□□□□ 0.89
Trim28Q62318 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim28Q62318 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trim28Q62318 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC20.6■□□□□ 0.89
Trim28Q62318 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC20.6■□□□□ 0.89
Trim28Q62318 CT943659.1-201ENSMUST00000215459 326 ntBASIC20.6■□□□□ 0.89
Trim28Q62318 AC159295.1-201ENSMUST00000225326 940 ntBASIC20.6■□□□□ 0.89
Trim28Q62318 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Trim28Q62318 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trim28Q62318 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Trim28Q62318 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trim28Q62318 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
Trim28Q62318 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Trim28Q62318 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim28Q62318 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim28Q62318 Gm13294-201ENSMUST00000121757 1330 ntBASIC20.59■□□□□ 0.89
Trim28Q62318 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim28Q62318 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Trim28Q62318 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim28Q62318 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim28Q62318 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC20.59■□□□□ 0.89
Trim28Q62318 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC20.59■□□□□ 0.89
Trim28Q62318 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC20.59■□□□□ 0.89
Trim28Q62318 Gm7229-201ENSMUST00000214719 1007 ntBASIC20.59■□□□□ 0.89
Trim28Q62318 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim28Q62318 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim28Q62318 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim28Q62318 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim28Q62318 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim28Q62318 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Trim28Q62318 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim28Q62318 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim28Q62318 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Trim28Q62318 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC20.58■□□□□ 0.89
Trim28Q62318 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim28Q62318 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim28Q62318 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim28Q62318 Gm5366-201ENSMUST00000215494 1338 ntBASIC20.58■□□□□ 0.89
Trim28Q62318 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim28Q62318 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Trim28Q62318 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim28Q62318 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms