Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Six4Q61321 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Six4Q61321 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Six4Q61321 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.07■□□□□ 0.16
Six4Q61321 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Six4Q61321 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Six4Q61321 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Gm24589-201ENSMUST00000116692 94 ntBASIC16.06■□□□□ 0.16
Six4Q61321 Gm6257-201ENSMUST00000163864 910 ntBASIC16.06■□□□□ 0.16
Six4Q61321 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.06■□□□□ 0.16
Six4Q61321 Umpk-ps-201ENSMUST00000211897 827 ntBASIC16.06■□□□□ 0.16
Six4Q61321 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Six4Q61321 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Six4Q61321 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Six4Q61321 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC16.06■□□□□ 0.16
Six4Q61321 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Six4Q61321 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Gm42918-201ENSMUST00000199249 1580 ntBASIC16.05■□□□□ 0.16
Six4Q61321 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Six4Q61321 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Six4Q61321 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Gm4459-201ENSMUST00000118750 468 ntBASIC16.05■□□□□ 0.16
Six4Q61321 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Gm9172-201ENSMUST00000212092 954 ntBASIC16.05■□□□□ 0.16
Six4Q61321 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC16.05■□□□□ 0.16
Six4Q61321 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Birc2-201ENSMUST00000054878 378 ntBASIC16.05■□□□□ 0.16
Six4Q61321 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.05■□□□□ 0.16
Six4Q61321 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.05■□□□□ 0.16
Six4Q61321 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.05■□□□□ 0.16
Six4Q61321 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Six4Q61321 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Six4Q61321 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Gm8784-201ENSMUST00000222096 1435 ntBASIC16.04■□□□□ 0.16
Six4Q61321 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Six4Q61321 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC16.04■□□□□ 0.16
Six4Q61321 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC16.04■□□□□ 0.16
Six4Q61321 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC16.04■□□□□ 0.16
Six4Q61321 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC16.04■□□□□ 0.16
Six4Q61321 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Six4Q61321 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Six4Q61321 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Six4Q61321 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Six4Q61321 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.03■□□□□ 0.16
Six4Q61321 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Six4Q61321 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Six4Q61321 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms