Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CtcfQ61164 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CtcfQ61164 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.57■□□□□ 0.4
CtcfQ61164 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CtcfQ61164 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.56■□□□□ 0.4
CtcfQ61164 Gm10252-201ENSMUST00000209541 832 ntBASIC17.56■□□□□ 0.4
CtcfQ61164 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.56■□□□□ 0.4
CtcfQ61164 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.56■□□□□ 0.4
CtcfQ61164 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CtcfQ61164 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CtcfQ61164 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.56■□□□□ 0.4
CtcfQ61164 Gm44729-201ENSMUST00000206759 2052 ntBASIC17.56■□□□□ 0.4
CtcfQ61164 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CtcfQ61164 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CtcfQ61164 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.55■□□□□ 0.4
CtcfQ61164 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Mir6982-201ENSMUST00000184354 68 ntBASIC17.55■□□□□ 0.4
CtcfQ61164 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.55■□□□□ 0.4
CtcfQ61164 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
CtcfQ61164 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
CtcfQ61164 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
CtcfQ61164 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC17.55■□□□□ 0.4
CtcfQ61164 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CtcfQ61164 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.54■□□□□ 0.4
CtcfQ61164 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CtcfQ61164 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.54■□□□□ 0.4
CtcfQ61164 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CtcfQ61164 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CtcfQ61164 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CtcfQ61164 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.53■□□□□ 0.4
CtcfQ61164 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.53■□□□□ 0.4
CtcfQ61164 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC17.53■□□□□ 0.4
CtcfQ61164 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
CtcfQ61164 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CtcfQ61164 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC17.52■□□□□ 0.4
CtcfQ61164 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms