Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Gm12892-201ENSMUST00000117367 1146 ntBASIC17.4■□□□□ 0.38
Cln3Q61124 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC17.4■□□□□ 0.38
Cln3Q61124 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC17.4■□□□□ 0.38
Cln3Q61124 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Cln3Q61124 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Gm13294-201ENSMUST00000121757 1330 ntBASIC17.4■□□□□ 0.38
Cln3Q61124 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Cln3Q61124 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Cln3Q61124 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.4■□□□□ 0.38
Cln3Q61124 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cln3Q61124 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Cln3Q61124 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cln3Q61124 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cln3Q61124 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cln3Q61124 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cln3Q61124 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Cln3Q61124 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
Cln3Q61124 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Cln3Q61124 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cln3Q61124 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cln3Q61124 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
Cln3Q61124 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC17.39■□□□□ 0.37
Cln3Q61124 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cln3Q61124 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cln3Q61124 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.39■□□□□ 0.37
Cln3Q61124 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cln3Q61124 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC17.38■□□□□ 0.37
Cln3Q61124 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Cln3Q61124 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Gm5177-201ENSMUST00000183092 997 ntBASIC17.38■□□□□ 0.37
Cln3Q61124 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC17.38■□□□□ 0.37
Cln3Q61124 AC158538.2-201ENSMUST00000225455 906 ntBASIC17.38■□□□□ 0.37
Cln3Q61124 AC155252.2-201ENSMUST00000226946 680 ntBASIC17.38■□□□□ 0.37
Cln3Q61124 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Cln3Q61124 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Gm8396-201ENSMUST00000057361 823 ntBASIC17.38■□□□□ 0.37
Cln3Q61124 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC17.38■□□□□ 0.37
Cln3Q61124 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cln3Q61124 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Cln3Q61124 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Cln3Q61124 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Gm5898-201ENSMUST00000121016 2071 ntBASIC17.37■□□□□ 0.37
Cln3Q61124 Gm13216-201ENSMUST00000117145 591 ntBASIC17.37■□□□□ 0.37
Cln3Q61124 Gm15920-201ENSMUST00000118998 402 ntBASIC17.37■□□□□ 0.37
Cln3Q61124 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC17.37■□□□□ 0.37
Cln3Q61124 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC17.37■□□□□ 0.37
Cln3Q61124 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC17.37■□□□□ 0.37
Cln3Q61124 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cln3Q61124 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.36■□□□□ 0.37
Cln3Q61124 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC17.36■□□□□ 0.37
Cln3Q61124 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC17.36■□□□□ 0.37
Cln3Q61124 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC17.36■□□□□ 0.37
Cln3Q61124 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC17.36■□□□□ 0.37
Cln3Q61124 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cln3Q61124 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 56.9 ms