Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Gm13836-201ENSMUST00000121159 501 ntBASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Gm23634-201ENSMUST00000175071 91 ntBASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
Trav5d-4Q5R1F6 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Gm6858-201ENSMUST00000208582 1468 ntBASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 AC132265.1-201ENSMUST00000219233 1665 ntBASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav5d-4Q5R1F6 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav5d-4Q5R1F6 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav5d-4Q5R1F6 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav5d-4Q5R1F6 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav5d-4Q5R1F6 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav5d-4Q5R1F6 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav5d-4Q5R1F6 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav5d-4Q5R1F6 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Trav5d-4Q5R1F6 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Trav5d-4Q5R1F6 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Rbfox2-206ENSMUST00000227314 1810 ntBASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Gm25016-201ENSMUST00000158399 131 ntBASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Gm6659-201ENSMUST00000174752 547 ntBASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Gm6728-201ENSMUST00000178117 1065 ntBASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 App-207ENSMUST00000227737 2827 ntBASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav5d-4Q5R1F6 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms