Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
Rnf43Q5NCP0 Chchd1-203ENSMUST00000224633 557 ntBASIC16.18■□□□□ 0.18
Rnf43Q5NCP0 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rnf43Q5NCP0 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rnf43Q5NCP0 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rnf43Q5NCP0 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Rnf43Q5NCP0 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Rnf43Q5NCP0 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Gm15920-201ENSMUST00000118998 402 ntBASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Bloc1s5-203ENSMUST00000224902 612 ntBASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Gm15500-202ENSMUST00000071641 1019 ntBASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Rnf43Q5NCP0 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 AC154231.1-201ENSMUST00000220564 2175 ntBASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Gm44945-201ENSMUST00000206764 1187 ntBASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Rnf43Q5NCP0 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Gm13216-201ENSMUST00000117145 591 ntBASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Gm8784-201ENSMUST00000222096 1435 ntBASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 CT010478.1-201ENSMUST00000220747 2787 ntBASIC16.15■□□□□ 0.18
Rnf43Q5NCP0 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Rnf43Q5NCP0 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.14■□□□□ 0.18
Rnf43Q5NCP0 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Rnf43Q5NCP0 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Rnf43Q5NCP0 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf43Q5NCP0 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf43Q5NCP0 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf43Q5NCP0 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf43Q5NCP0 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Rnf43Q5NCP0 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms