Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Usp28Q5I043 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Gm9987-201ENSMUST00000069768 567 ntBASIC18.11■□□□□ 0.49
Usp28Q5I043 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC18.11■□□□□ 0.49
Usp28Q5I043 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Usp28Q5I043 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
Usp28Q5I043 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Usp28Q5I043 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC18.1■□□□□ 0.49
Usp28Q5I043 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp28Q5I043 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Usp28Q5I043 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.09■□□□□ 0.49
Usp28Q5I043 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Usp28Q5I043 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Usp28Q5I043 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Gm6345-202ENSMUST00000180900 204 ntBASIC18.09■□□□□ 0.49
Usp28Q5I043 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Mir6404-201ENSMUST00000183699 94 ntBASIC18.09■□□□□ 0.49
Usp28Q5I043 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
Usp28Q5I043 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp28Q5I043 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
Usp28Q5I043 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Usp28Q5I043 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Usp28Q5I043 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC18.08■□□□□ 0.49
Usp28Q5I043 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp28Q5I043 AC125350.1-201ENSMUST00000225115 903 ntBASIC18.08■□□□□ 0.48
Usp28Q5I043 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp28Q5I043 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Usp28Q5I043 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp28Q5I043 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
Usp28Q5I043 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Usp28Q5I043 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
Usp28Q5I043 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp28Q5I043 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp28Q5I043 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp28Q5I043 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp28Q5I043 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC18.07■□□□□ 0.48
Usp28Q5I043 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp28Q5I043 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp28Q5I043 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp28Q5I043 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Usp28Q5I043 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC18.07■□□□□ 0.48
Usp28Q5I043 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Usp28Q5I043 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp28Q5I043 Gm10231-201ENSMUST00000181584 441 ntBASIC18.07■□□□□ 0.48
Usp28Q5I043 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Usp28Q5I043 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp28Q5I043 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC18.07■□□□□ 0.48
Usp28Q5I043 Gm10175-202ENSMUST00000208752 441 ntBASIC18.07■□□□□ 0.48
Usp28Q5I043 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC18.07■□□□□ 0.48
Usp28Q5I043 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms