Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm9889-202ENSMUST00000206983 1577 ntBASIC18.73■□□□□ 0.59
Limch1Q3UH68 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Gm43514-201ENSMUST00000198852 424 ntBASIC18.73■□□□□ 0.59
Limch1Q3UH68 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Limch1Q3UH68 AC132265.1-201ENSMUST00000219233 1665 ntBASIC18.73■□□□□ 0.59
Limch1Q3UH68 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
Limch1Q3UH68 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Gm13884-201ENSMUST00000118103 829 ntBASIC18.72■□□□□ 0.59
Limch1Q3UH68 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC18.72■□□□□ 0.59
Limch1Q3UH68 Gm6858-201ENSMUST00000208582 1468 ntBASIC18.71■□□□□ 0.59
Limch1Q3UH68 AC153526.5-201ENSMUST00000218661 2147 ntBASIC18.71■□□□□ 0.59
Limch1Q3UH68 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Gm42473-201ENSMUST00000201056 2291 ntBASIC18.71■□□□□ 0.59
Limch1Q3UH68 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Gm6443-201ENSMUST00000203599 874 ntBASIC18.71■□□□□ 0.59
Limch1Q3UH68 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 AC125350.1-201ENSMUST00000225115 903 ntBASIC18.71■□□□□ 0.59
Limch1Q3UH68 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Limch1Q3UH68 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Gm44729-201ENSMUST00000206759 2052 ntBASIC18.7■□□□□ 0.58
Limch1Q3UH68 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Limch1Q3UH68 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms