Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Gm27528-202ENSMUST00000222916 2012 ntBASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Col28a1Q2UY11 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 AC154412.1-201ENSMUST00000226540 2786 ntBASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Gm43353-201ENSMUST00000199224 1295 ntBASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col28a1Q2UY11 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col28a1Q2UY11 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Gm14464-201ENSMUST00000119658 1254 ntBASIC15.48■□□□□ 0.07
Col28a1Q2UY11 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Gm2274-201ENSMUST00000184539 609 ntBASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Gm44729-201ENSMUST00000206759 2052 ntBASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col28a1Q2UY11 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col28a1Q2UY11 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms