Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC13.56□□□□□ -0.24
Col8a1Q00780 Gm11873-201ENSMUST00000117877 1304 ntBASIC13.56□□□□□ -0.24
Col8a1Q00780 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Col8a1Q00780 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Gm45244-201ENSMUST00000211328 2200 ntBASIC13.56□□□□□ -0.24
Col8a1Q00780 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
Col8a1Q00780 Gm5837-201ENSMUST00000191844 1369 ntBASIC13.56□□□□□ -0.24
Col8a1Q00780 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Col8a1Q00780 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC13.55□□□□□ -0.24
Col8a1Q00780 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC13.55□□□□□ -0.24
Col8a1Q00780 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Col8a1Q00780 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC13.55□□□□□ -0.24
Col8a1Q00780 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC13.55□□□□□ -0.24
Col8a1Q00780 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC13.55□□□□□ -0.24
Col8a1Q00780 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC13.55□□□□□ -0.24
Col8a1Q00780 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col8a1Q00780 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC13.54□□□□□ -0.24
Col8a1Q00780 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Col8a1Q00780 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Gm37194-201ENSMUST00000193092 3031 ntBASIC13.54□□□□□ -0.24
Col8a1Q00780 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC13.54□□□□□ -0.24
Col8a1Q00780 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Col8a1Q00780 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Col8a1Q00780 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
Col8a1Q00780 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC13.54□□□□□ -0.24
Col8a1Q00780 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC13.54□□□□□ -0.24
Col8a1Q00780 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Col8a1Q00780 Gm5682-201ENSMUST00000173402 505 ntBASIC13.54□□□□□ -0.24
Col8a1Q00780 Gm5253-201ENSMUST00000187104 1025 ntBASIC13.54□□□□□ -0.24
Col8a1Q00780 AC131709.1-201ENSMUST00000224731 1180 ntBASIC13.54□□□□□ -0.24
Col8a1Q00780 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Col8a1Q00780 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Col8a1Q00780 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
Col8a1Q00780 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col8a1Q00780 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
Col8a1Q00780 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Col8a1Q00780 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Col8a1Q00780 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Col8a1Q00780 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
Col8a1Q00780 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC13.53□□□□□ -0.24
Col8a1Q00780 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms