Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm10284-201ENSMUST00000145057 1005 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm10481-201ENSMUST00000179228 1002 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm2574-201ENSMUST00000181051 1002 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm3200-201ENSMUST00000181493 1002 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm8825-201ENSMUST00000182565 998 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm4518-201ENSMUST00000182638 718 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm8330-201ENSMUST00000182754 1008 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm4575-201ENSMUST00000182991 1002 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm8709-201ENSMUST00000183230 1012 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm43575-201ENSMUST00000196420 516 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm18622-201ENSMUST00000219361 595 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 AC090659.1-201ENSMUST00000224334 768 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 AC159106.1-201ENSMUST00000224421 690 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm10293-201ENSMUST00000076317 1002 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Gm6316-201ENSMUST00000082064 1020 ntBASIC13.74□□□□□ -0.21
Nkx3-1P97436 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Nkx3-1P97436 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 AC122901.1-201ENSMUST00000214203 1790 ntBASIC13.73□□□□□ -0.21
Nkx3-1P97436 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 AC131586.3-201ENSMUST00000228355 1367 ntBASIC13.73□□□□□ -0.21
Nkx3-1P97436 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Gm45412-201ENSMUST00000210217 2275 ntBASIC13.73□□□□□ -0.21
Nkx3-1P97436 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Gm2756-201ENSMUST00000195851 400 ntBASIC13.73□□□□□ -0.21
Nkx3-1P97436 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC13.73□□□□□ -0.21
Nkx3-1P97436 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Gm45774-201ENSMUST00000211992 2665 ntBASIC13.73□□□□□ -0.21
Nkx3-1P97436 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Nkx3-1P97436 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Nkx3-1P97436 AC154231.1-201ENSMUST00000220564 2175 ntBASIC13.72□□□□□ -0.21
Nkx3-1P97436 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Gm28265-201ENSMUST00000188201 2319 ntBASIC13.72□□□□□ -0.21
Nkx3-1P97436 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC13.72□□□□□ -0.21
Nkx3-1P97436 Gm13216-201ENSMUST00000117145 591 ntBASIC13.72□□□□□ -0.21
Nkx3-1P97436 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms