Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Cdh11P55288 Gm44443-201ENSMUST00000204396 5633 ntBASIC14.55□□□□□ -0.08
Cdh11P55288 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Cdh11P55288 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Gm45203-201ENSMUST00000206384 1831 ntBASIC14.55□□□□□ -0.08
Cdh11P55288 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Cdh11P55288 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Cdh11P55288 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
Cdh11P55288 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Gm26039-201ENSMUST00000158152 144 ntBASIC14.55□□□□□ -0.08
Cdh11P55288 Gm5587-201ENSMUST00000206270 674 ntBASIC14.55□□□□□ -0.08
Cdh11P55288 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Cdh11P55288 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdh11P55288 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
Cdh11P55288 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC14.54□□□□□ -0.08
Cdh11P55288 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Cdh11P55288 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC14.54□□□□□ -0.08
Cdh11P55288 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdh11P55288 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Cdh11P55288 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
Cdh11P55288 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC14.54□□□□□ -0.08
Cdh11P55288 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC14.54□□□□□ -0.08
Cdh11P55288 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC14.54□□□□□ -0.08
Cdh11P55288 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Cdh11P55288 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Cdh11P55288 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Cdh11P55288 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Gm11355-201ENSMUST00000121120 306 ntBASIC14.53□□□□□ -0.08
Cdh11P55288 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
Cdh11P55288 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Ccdc166-201ENSMUST00000182172 2584 ntBASIC14.53□□□□□ -0.08
Cdh11P55288 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdh11P55288 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC14.52□□□□□ -0.08
Cdh11P55288 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdh11P55288 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdh11P55288 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC14.52□□□□□ -0.09
Cdh11P55288 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdh11P55288 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdh11P55288 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms