Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC20.11■□□□□ 0.81
Msh6P54276 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh6P54276 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Msh6P54276 Gm14701-201ENSMUST00000117156 348 ntBASIC20.1■□□□□ 0.81
Msh6P54276 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC20.1■□□□□ 0.81
Msh6P54276 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Msh6P54276 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC20.1■□□□□ 0.81
Msh6P54276 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC20.1■□□□□ 0.81
Msh6P54276 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh6P54276 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC20.09■□□□□ 0.81
Msh6P54276 Gm14057-201ENSMUST00000120631 482 ntBASIC20.09■□□□□ 0.81
Msh6P54276 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC20.09■□□□□ 0.81
Msh6P54276 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC20.09■□□□□ 0.81
Msh6P54276 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Msh6P54276 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh6P54276 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC20.08■□□□□ 0.81
Msh6P54276 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh6P54276 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC20.08■□□□□ 0.81
Msh6P54276 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Msh6P54276 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC20.08■□□□□ 0.81
Msh6P54276 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC20.08■□□□□ 0.81
Msh6P54276 AC159114.1-201ENSMUST00000220349 266 ntBASIC20.08■□□□□ 0.81
Msh6P54276 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Msh6P54276 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Msh6P54276 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Msh6P54276 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Msh6P54276 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh6P54276 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh6P54276 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh6P54276 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh6P54276 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh6P54276 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh6P54276 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh6P54276 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh6P54276 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh6P54276 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh6P54276 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh6P54276 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh6P54276 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh6P54276 Gm44872-201ENSMUST00000207864 420 ntBASIC20.08■□□□□ 0.8
Msh6P54276 AC154572.2-201ENSMUST00000225105 997 ntBASIC20.08■□□□□ 0.8
Msh6P54276 AC147366.1-201ENSMUST00000227671 852 ntBASIC20.08■□□□□ 0.8
Msh6P54276 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh6P54276 Gm44729-201ENSMUST00000206759 2052 ntBASIC20.07■□□□□ 0.8
Msh6P54276 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
Msh6P54276 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC20.07■□□□□ 0.8
Msh6P54276 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Msh6P54276 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC20.07■□□□□ 0.8
Msh6P54276 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
Msh6P54276 Gm37166-201ENSMUST00000195473 2474 ntBASIC20.07■□□□□ 0.8
Msh6P54276 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
Msh6P54276 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC20.07■□□□□ 0.8
Msh6P54276 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC20.07■□□□□ 0.8
Msh6P54276 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 Gm17968-201ENSMUST00000194902 784 ntBASIC20.07■□□□□ 0.8
Msh6P54276 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC20.07■□□□□ 0.8
Msh6P54276 AC093926.2-201ENSMUST00000214468 1228 ntBASIC20.07■□□□□ 0.8
Msh6P54276 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh6P54276 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh6P54276 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC20.06■□□□□ 0.8
Msh6P54276 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh6P54276 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh6P54276 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh6P54276 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh6P54276 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh6P54276 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh6P54276 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh6P54276 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms