Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rfx3P48381 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rfx3P48381 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rfx3P48381 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC14.43□□□□□ -0.1
Rfx3P48381 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Rfx3P48381 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rfx3P48381 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Rfx3P48381 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Rfx3P48381 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Rfx3P48381 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Rfx3P48381 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC14.42□□□□□ -0.1
Rfx3P48381 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
Rfx3P48381 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC14.42□□□□□ -0.1
Rfx3P48381 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rfx3P48381 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Rfx3P48381 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Rfx3P48381 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Rfx3P48381 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Rfx3P48381 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Gm22697-201ENSMUST00000175194 63 ntBASIC14.41□□□□□ -0.1
Rfx3P48381 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Rfx3P48381 AC121577.1-201ENSMUST00000227302 707 ntBASIC14.41□□□□□ -0.1
Rfx3P48381 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC14.41□□□□□ -0.1
Rfx3P48381 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
Rfx3P48381 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
Rfx3P48381 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
Rfx3P48381 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC14.41□□□□□ -0.1
Rfx3P48381 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rfx3P48381 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Rfx3P48381 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Rfx3P48381 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Rfx3P48381 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Rfx3P48381 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Rfx3P48381 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Rfx3P48381 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Rfx3P48381 Gm18101-201ENSMUST00000215769 548 ntBASIC14.4□□□□□ -0.1
Rfx3P48381 Gm21559-201ENSMUST00000220638 855 ntBASIC14.4□□□□□ -0.1
Rfx3P48381 AC159205.3-201ENSMUST00000224614 874 ntBASIC14.4□□□□□ -0.1
Rfx3P48381 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Gm8587-201ENSMUST00000076538 843 ntBASIC14.4□□□□□ -0.1
Rfx3P48381 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Rfx3P48381 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rfx3P48381 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms