Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC13.26□□□□□ -0.29
Hmgb3O54879 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Hmgb3O54879 AC163280.1-201ENSMUST00000228194 1100 ntBASIC13.26□□□□□ -0.29
Hmgb3O54879 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
Hmgb3O54879 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Hmgb3O54879 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC13.25□□□□□ -0.29
Hmgb3O54879 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Hmgb3O54879 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC13.25□□□□□ -0.29
Hmgb3O54879 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Hmgb3O54879 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Gm9694-201ENSMUST00000193347 1189 ntBASIC13.25□□□□□ -0.29
Hmgb3O54879 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC13.25□□□□□ -0.29
Hmgb3O54879 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC13.25□□□□□ -0.29
Hmgb3O54879 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC13.25□□□□□ -0.29
Hmgb3O54879 Gm18025-201ENSMUST00000221733 862 ntBASIC13.25□□□□□ -0.29
Hmgb3O54879 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Hmgb3O54879 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hmgb3O54879 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC13.25□□□□□ -0.29
Hmgb3O54879 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Hmgb3O54879 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Hmgb3O54879 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Hmgb3O54879 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Hmgb3O54879 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Hmgb3O54879 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC13.24□□□□□ -0.29
Hmgb3O54879 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC13.24□□□□□ -0.29
Hmgb3O54879 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
Hmgb3O54879 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hmgb3O54879 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Hmgb3O54879 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Hmgb3O54879 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Gm44616-201ENSMUST00000206417 1732 ntBASIC13.23□□□□□ -0.29
Hmgb3O54879 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Hmgb3O54879 Gm11249-201ENSMUST00000117071 859 ntBASIC13.23□□□□□ -0.29
Hmgb3O54879 Gm12382-201ENSMUST00000122005 922 ntBASIC13.23□□□□□ -0.29
Hmgb3O54879 Gm27000-201ENSMUST00000182943 842 ntBASIC13.23□□□□□ -0.29
Hmgb3O54879 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 AC122769.4-201ENSMUST00000228166 901 ntBASIC13.23□□□□□ -0.29
Hmgb3O54879 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
Hmgb3O54879 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hmgb3O54879 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms