Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-854P-201ENST00000364036 107 ntBASIC-1.96□□□□□ -2.72
CHMP3Q9Y3E7 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.97□□□□□ -2.72
CHMP3Q9Y3E7 RNU6-226P-201ENST00000363778 107 ntBASIC-1.98□□□□□ -2.73
CHMP3Q9Y3E7 MIR4756-201ENST00000577874 78 ntBASIC-1.99□□□□□ -2.73
CHMP3Q9Y3E7 SNX3P1X-201ENST00000414887 175 ntBASIC-2□□□□□ -2.73
CHMP3Q9Y3E7 MIR3115-201ENST00000577915 68 ntBASIC-2.02□□□□□ -2.73
CHMP3Q9Y3E7 MIR198-201ENST00000637333 62 ntBASIC-2.02□□□□□ -2.73
CHMP3Q9Y3E7 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.03□□□□□ -2.73
CHMP3Q9Y3E7 MIR3165-201ENST00000579874 75 ntBASIC-2.06□□□□□ -2.74
CHMP3Q9Y3E7 SNORD18.1-201ENST00000363807 70 ntBASIC-2.11□□□□□ -2.75
CHMP3Q9Y3E7 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.13□□□□□ -2.75
CHMP3Q9Y3E7 Y_RNA.468-201ENST00000384298 102 ntBASIC-2.14□□□□□ -2.75
CHMP3Q9Y3E7 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.16□□□□□ -2.76
CHMP3Q9Y3E7 RNU6-737P-201ENST00000365370 107 ntBASIC-2.18□□□□□ -2.76
CHMP3Q9Y3E7 RNU6-422P-201ENST00000384632 107 ntBASIC-2.18□□□□□ -2.76
CHMP3Q9Y3E7 RNU6-118P-201ENST00000516552 102 ntBASIC-2.18□□□□□ -2.76
CHMP3Q9Y3E7 MIR601-201ENST00000385256 79 ntBASIC-2.19□□□□□ -2.76
CHMP3Q9Y3E7 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.2□□□□□ -2.76
CHMP3Q9Y3E7 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.21□□□□□ -2.76
CHMP3Q9Y3E7 MIR664B-201ENST00000626756 61 ntBASIC-2.21□□□□□ -2.76
CHMP3Q9Y3E7 MIR4748-201ENST00000578076 82 ntBASIC-2.22□□□□□ -2.76
CHMP3Q9Y3E7 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.22□□□□□ -2.76
CHMP3Q9Y3E7 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.27□□□□□ -2.77
CHMP3Q9Y3E7 AL731768.1-201ENST00000603124 139 ntBASIC-2.31□□□□□ -2.78
CHMP3Q9Y3E7 RNU6-1024P-201ENST00000384199 107 ntBASIC-2.35□□□□□ -2.79
CHMP3Q9Y3E7 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.35□□□□□ -2.79
CHMP3Q9Y3E7 MIR124-1-201ENST00000385275 85 ntBASIC-2.35□□□□□ -2.79
CHMP3Q9Y3E7 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.36□□□□□ -2.79
CHMP3Q9Y3E7 RNU6-194P-201ENST00000363862 105 ntBASIC-2.38□□□□□ -2.79
CHMP3Q9Y3E7 RNY4P9-201ENST00000363194 97 ntBASIC-2.4□□□□□ -2.79
CHMP3Q9Y3E7 Y_RNA.232-201ENST00000364369 96 ntBASIC-2.41□□□□□ -2.8
CHMP3Q9Y3E7 MIR548T-201ENST00000408369 74 ntBASIC-2.42□□□□□ -2.8
CHMP3Q9Y3E7 RNA5SP405-201ENST00000363059 114 ntBASIC-2.43□□□□□ -2.8
CHMP3Q9Y3E7 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.43□□□□□ -2.8
CHMP3Q9Y3E7 RNU6-620P-201ENST00000384017 96 ntBASIC-2.43□□□□□ -2.8
CHMP3Q9Y3E7 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.46□□□□□ -2.8
CHMP3Q9Y3E7 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.46□□□□□ -2.8
CHMP3Q9Y3E7 Y_RNA.442-201ENST00000384131 102 ntBASIC-2.47□□□□□ -2.8
CHMP3Q9Y3E7 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.47□□□□□ -2.8
CHMP3Q9Y3E7 Y_RNA.413-201ENST00000384007 102 ntBASIC-2.48□□□□□ -2.81
CHMP3Q9Y3E7 Y_RNA.754-201ENST00000476024 102 ntBASIC-2.48□□□□□ -2.81
CHMP3Q9Y3E7 RNU6-1161P-201ENST00000516176 102 ntBASIC-2.48□□□□□ -2.81
CHMP3Q9Y3E7 Y_RNA.790-201ENST00000614282 102 ntBASIC-2.48□□□□□ -2.81
CHMP3Q9Y3E7 Y_RNA.782-201ENST00000614695 102 ntBASIC-2.48□□□□□ -2.81
CHMP3Q9Y3E7 MIR4723-201ENST00000585070 81 ntBASIC-2.49□□□□□ -2.81
CHMP3Q9Y3E7 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-2.5□□□□□ -2.81
CHMP3Q9Y3E7 RNA5SP180-201ENST00000516181 101 ntBASIC-2.52□□□□□ -2.81
CHMP3Q9Y3E7 MIR548AH-201ENST00000637109 76 ntBASIC-2.54□□□□□ -2.82
CHMP3Q9Y3E7 U4.2-201ENST00000618561 85 ntBASIC-2.55□□□□□ -2.82
CHMP3Q9Y3E7 MIR365A-201ENST00000362260 87 ntBASIC-2.58□□□□□ -2.82
CHMP3Q9Y3E7 RNA5SP461-201ENST00000516451 104 ntBASIC-2.59□□□□□ -2.82
CHMP3Q9Y3E7 MIR1246-201ENST00000636535 73 ntBASIC-2.6□□□□□ -2.83
CHMP3Q9Y3E7 Y_RNA.181-201ENST00000363872 101 ntBASIC-2.61□□□□□ -2.83
CHMP3Q9Y3E7 SNORD115-45-201ENST00000391078 81 ntBASIC-2.62□□□□□ -2.83
CHMP3Q9Y3E7 AL359920.1-201ENST00000618332 176 ntBASIC-2.62□□□□□ -2.83
CHMP3Q9Y3E7 MIR1285-2-201ENST00000408311 88 ntBASIC-2.63□□□□□ -2.83
CHMP3Q9Y3E7 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.64□□□□□ -2.83
CHMP3Q9Y3E7 MIR4441-201ENST00000582623 100 ntBASIC-2.64□□□□□ -2.83
CHMP3Q9Y3E7 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.65□□□□□ -2.83
CHMP3Q9Y3E7 SNORD114-3-201ENST00000364969 75 ntBASIC-2.65□□□□□ -2.83
CHMP3Q9Y3E7 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.65□□□□□ -2.83
CHMP3Q9Y3E7 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.69□□□□□ -2.84
CHMP3Q9Y3E7 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.7□□□□□ -2.84
CHMP3Q9Y3E7 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.7□□□□□ -2.84
CHMP3Q9Y3E7 RNU6-627P-201ENST00000364032 102 ntBASIC-2.76□□□□□ -2.85
CHMP3Q9Y3E7 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.76□□□□□ -2.85
CHMP3Q9Y3E7 MIR1207-201ENST00000408249 87 ntBASIC-2.76□□□□□ -2.85
CHMP3Q9Y3E7 RNY4P25-201ENST00000459254 96 ntBASIC-2.77□□□□□ -2.85
CHMP3Q9Y3E7 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.78□□□□□ -2.85
CHMP3Q9Y3E7 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.8□□□□□ -2.86
CHMP3Q9Y3E7 MIR3139-201ENST00000579145 76 ntBASIC-2.81□□□□□ -2.86
CHMP3Q9Y3E7 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.86□□□□□ -2.87
CHMP3Q9Y3E7 MIR5693-201ENST00000577722 73 ntBASIC-2.88□□□□□ -2.87
CHMP3Q9Y3E7 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.9□□□□□ -2.87
CHMP3Q9Y3E7 MT-TM-201ENST00000387377 68 ntBASIC-2.95□□□□□ -2.88
CHMP3Q9Y3E7 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.97□□□□□ -2.88
CHMP3Q9Y3E7 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.99□□□□□ -2.89
CHMP3Q9Y3E7 RNY4P27-201ENST00000363341 96 ntBASIC-3□□□□□ -2.89
CHMP3Q9Y3E7 Y_RNA.266-201ENST00000364678 96 ntBASIC-3.06□□□□□ -2.9
CHMP3Q9Y3E7 RNU6-1044P-201ENST00000384755 107 ntBASIC-3.11□□□□□ -2.91
CHMP3Q9Y3E7 Y_RNA.397-201ENST00000383950 98 ntBASIC-3.13□□□□□ -2.91
CHMP3Q9Y3E7 SNORD114-13-201ENST00000364377 74 ntBASIC-3.14□□□□□ -2.91
CHMP3Q9Y3E7 RNU6-230P-201ENST00000362457 104 ntBASIC-3.16□□□□□ -2.92
CHMP3Q9Y3E7 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-3.19□□□□□ -2.92
CHMP3Q9Y3E7 Y_RNA.830-201ENST00000628531 96 ntBASIC-3.22□□□□□ -2.92
CHMP3Q9Y3E7 Y_RNA.684-201ENST00000516510 99 ntBASIC-3.39□□□□□ -2.95
CHMP3Q9Y3E7 RNU4-85P-201ENST00000364675 123 ntBASIC-3.41□□□□□ -2.96
CHMP3Q9Y3E7 RNU6-119P-201ENST00000364882 107 ntBASIC-3.42□□□□□ -2.96
CHMP3Q9Y3E7 RNA5SP449-201ENST00000516871 130 ntBASIC-3.44□□□□□ -2.96
CHMP3Q9Y3E7 Y_RNA.165-201ENST00000363721 102 ntBASIC-3.54□□□□□ -2.98
CHMP3Q9Y3E7 Y_RNA.475-201ENST00000384345 101 ntBASIC-3.54□□□□□ -2.98
CHMP3Q9Y3E7 RNU6-892P-201ENST00000410335 99 ntBASIC-3.6□□□□□ -2.99
CHMP3Q9Y3E7 RNU6-1247P-201ENST00000516622 98 ntBASIC-3.6□□□□□ -2.99
CHMP3Q9Y3E7 Y_RNA.228-201ENST00000364346 98 ntBASIC-3.65□□□□□ -2.99
CHMP3Q9Y3E7 RNU6-665P-201ENST00000384639 107 ntBASIC-3.73□□□□□ -3.01
CHMP3Q9Y3E7 MIR496-201ENST00000385226 102 ntBASIC-3.77□□□□□ -3.01
CHMP3Q9Y3E7 RNY4P7-201ENST00000364600 96 ntBASIC-3.8□□□□□ -3.02
CHMP3Q9Y3E7 MIR509-1-201ENST00000385265 94 ntBASIC-3.83□□□□□ -3.02
CHMP3Q9Y3E7 MIR509-2-201ENST00000390724 91 ntBASIC-3.83□□□□□ -3.02
CHMP3Q9Y3E7 SNORD54-201ENST00000459159 67 ntBASIC-3.95□□□□□ -3.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms