Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.27□□□□□ -2.61
PDLIM4P50479 MIR4756-201ENST00000577874 78 ntBASIC-1.27□□□□□ -2.61
PDLIM4P50479 RNU6-822P-201ENST00000362707 106 ntBASIC-1.28□□□□□ -2.61
PDLIM4P50479 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.28□□□□□ -2.61
PDLIM4P50479 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.28□□□□□ -2.61
PDLIM4P50479 MIR548AM-201ENST00000584298 74 ntBASIC-1.28□□□□□ -2.61
PDLIM4P50479 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.29□□□□□ -2.62
PDLIM4P50479 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.29□□□□□ -2.62
PDLIM4P50479 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.29□□□□□ -2.62
PDLIM4P50479 RNU6-912P-201ENST00000363800 104 ntBASIC-1.3□□□□□ -2.62
PDLIM4P50479 MIR548W-201ENST00000581970 74 ntBASIC-1.3□□□□□ -2.62
PDLIM4P50479 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.32□□□□□ -2.62
PDLIM4P50479 MIR487B-201ENST00000385021 84 ntBASIC-1.32□□□□□ -2.62
PDLIM4P50479 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.33□□□□□ -2.62
PDLIM4P50479 snoU13.10-201ENST00000459301 103 ntBASIC-1.33□□□□□ -2.62
PDLIM4P50479 RNA5SP405-201ENST00000363059 114 ntBASIC-1.34□□□□□ -2.62
PDLIM4P50479 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.34□□□□□ -2.62
PDLIM4P50479 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.34□□□□□ -2.62
PDLIM4P50479 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.35□□□□□ -2.63
PDLIM4P50479 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.36□□□□□ -2.63
PDLIM4P50479 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.36□□□□□ -2.63
PDLIM4P50479 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.37□□□□□ -2.63
PDLIM4P50479 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.38□□□□□ -2.63
PDLIM4P50479 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.38□□□□□ -2.63
PDLIM4P50479 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.4□□□□□ -2.63
PDLIM4P50479 RNU6-345P-201ENST00000517001 107 ntBASIC-1.4□□□□□ -2.63
PDLIM4P50479 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.4□□□□□ -2.63
PDLIM4P50479 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.42□□□□□ -2.64
PDLIM4P50479 AC097484.2-201ENST00000509147 251 ntBASIC-1.42□□□□□ -2.64
PDLIM4P50479 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.43□□□□□ -2.64
PDLIM4P50479 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.43□□□□□ -2.64
PDLIM4P50479 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.43□□□□□ -2.64
PDLIM4P50479 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.46□□□□□ -2.64
PDLIM4P50479 RNA5SP224-201ENST00000365069 126 ntBASIC-1.46□□□□□ -2.64
PDLIM4P50479 FTX_4.1-201ENST00000616291 147 ntBASIC-1.46□□□□□ -2.64
PDLIM4P50479 RNU6-194P-201ENST00000363862 105 ntBASIC-1.47□□□□□ -2.64
PDLIM4P50479 RNU6-836P-201ENST00000362920 107 ntBASIC-1.48□□□□□ -2.65
PDLIM4P50479 SNORD113-3-201ENST00000364830 72 ntBASIC-1.48□□□□□ -2.65
PDLIM4P50479 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.49□□□□□ -2.65
PDLIM4P50479 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.49□□□□□ -2.65
PDLIM4P50479 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.49□□□□□ -2.65
PDLIM4P50479 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.49□□□□□ -2.65
PDLIM4P50479 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.49□□□□□ -2.65
PDLIM4P50479 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.49□□□□□ -2.65
PDLIM4P50479 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.49□□□□□ -2.65
PDLIM4P50479 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.49□□□□□ -2.65
PDLIM4P50479 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.49□□□□□ -2.65
PDLIM4P50479 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.5□□□□□ -2.65
PDLIM4P50479 RNU6-803P-201ENST00000516034 102 ntBASIC-1.51□□□□□ -2.65
PDLIM4P50479 SNORD115.2-201ENST00000391126 59 ntBASIC-1.53□□□□□ -2.65
PDLIM4P50479 MIR1254-1-201ENST00000408257 97 ntBASIC-1.54□□□□□ -2.66
PDLIM4P50479 MIR656-201ENST00000385224 78 ntBASIC-1.55□□□□□ -2.66
PDLIM4P50479 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.57□□□□□ -2.66
PDLIM4P50479 RNU6-230P-201ENST00000362457 104 ntBASIC-1.58□□□□□ -2.66
PDLIM4P50479 SNORD45C-201ENST00000383893 79 ntBASIC-1.58□□□□□ -2.66
PDLIM4P50479 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.58□□□□□ -2.66
PDLIM4P50479 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.59□□□□□ -2.66
PDLIM4P50479 MIR4748-201ENST00000578076 82 ntBASIC-1.59□□□□□ -2.66
PDLIM4P50479 U6.103-201ENST00000637085 61 ntBASIC-1.6□□□□□ -2.67
PDLIM4P50479 Y_RNA.658-201ENST00000515990 97 ntBASIC-1.63□□□□□ -2.67
PDLIM4P50479 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.64□□□□□ -2.67
PDLIM4P50479 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.71□□□□□ -2.68
PDLIM4P50479 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.74□□□□□ -2.69
PDLIM4P50479 Y_RNA.511-201ENST00000384514 103 ntBASIC-1.75□□□□□ -2.69
PDLIM4P50479 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.75□□□□□ -2.69
PDLIM4P50479 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.76□□□□□ -2.69
PDLIM4P50479 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.78□□□□□ -2.69
PDLIM4P50479 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.8□□□□□ -2.7
PDLIM4P50479 RNY4P9-201ENST00000363194 97 ntBASIC-1.81□□□□□ -2.7
PDLIM4P50479 SNORD111B-201ENST00000408587 80 ntBASIC-1.81□□□□□ -2.7
PDLIM4P50479 RNU6-724P-201ENST00000390958 105 ntBASIC-1.82□□□□□ -2.7
PDLIM4P50479 RNA5SP106-201ENST00000517274 100 ntBASIC-1.83□□□□□ -2.7
PDLIM4P50479 RNU6-485P-201ENST00000363475 107 ntBASIC-1.84□□□□□ -2.7
PDLIM4P50479 RNU6-854P-201ENST00000364036 107 ntBASIC-1.85□□□□□ -2.71
PDLIM4P50479 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.85□□□□□ -2.71
PDLIM4P50479 AL731768.1-201ENST00000603124 139 ntBASIC-1.85□□□□□ -2.71
PDLIM4P50479 RNU6-133P-201ENST00000383989 107 ntBASIC-1.91□□□□□ -2.72
PDLIM4P50479 MIR509-1-201ENST00000385265 94 ntBASIC-1.91□□□□□ -2.72
PDLIM4P50479 MIR509-2-201ENST00000390724 91 ntBASIC-1.91□□□□□ -2.72
PDLIM4P50479 MIR5693-201ENST00000577722 73 ntBASIC-1.91□□□□□ -2.72
PDLIM4P50479 RNY4P10-201ENST00000365571 96 ntBASIC-1.93□□□□□ -2.72
PDLIM4P50479 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.94□□□□□ -2.72
PDLIM4P50479 Y_RNA.520-201ENST00000384556 102 ntBASIC-1.94□□□□□ -2.72
PDLIM4P50479 Y_RNA.657-201ENST00000515983 102 ntBASIC-1.94□□□□□ -2.72
PDLIM4P50479 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.94□□□□□ -2.72
PDLIM4P50479 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-1.96□□□□□ -2.72
PDLIM4P50479 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.97□□□□□ -2.72
PDLIM4P50479 RNU6-1091P-201ENST00000363945 107 ntBASIC-2.01□□□□□ -2.73
PDLIM4P50479 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.01□□□□□ -2.73
PDLIM4P50479 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.02□□□□□ -2.73
PDLIM4P50479 RNU6-737P-201ENST00000365370 107 ntBASIC-2.03□□□□□ -2.73
PDLIM4P50479 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.03□□□□□ -2.73
PDLIM4P50479 AL359920.1-201ENST00000618332 176 ntBASIC-2.05□□□□□ -2.74
PDLIM4P50479 RNU6-422P-201ENST00000384632 107 ntBASIC-2.06□□□□□ -2.74
PDLIM4P50479 RNU6-1128P-201ENST00000362825 109 ntBASIC-2.07□□□□□ -2.74
PDLIM4P50479 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.07□□□□□ -2.74
PDLIM4P50479 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.1□□□□□ -2.75
PDLIM4P50479 RNU6-1161P-201ENST00000516176 102 ntBASIC-2.1□□□□□ -2.75
PDLIM4P50479 RNY4P25-201ENST00000459254 96 ntBASIC-2.11□□□□□ -2.75
PDLIM4P50479 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.12□□□□□ -2.75
Retrieved 100 of 98,524 protein–RNA pairs in 209.3 ms