Protein–RNA interactions for Protein: P0DPA3

SNHG28, Putative uncharacterized protein SNHG28, humanhuman

Predictions only

Length 235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG28P0DPA3 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.14□□□□□ -2.59
SNHG28P0DPA3 SNORD18.1-201ENST00000363807 70 ntBASIC-1.15□□□□□ -2.59
SNHG28P0DPA3 MIR3165-201ENST00000579874 75 ntBASIC-1.15□□□□□ -2.59
SNHG28P0DPA3 MIR124-1-201ENST00000385275 85 ntBASIC-1.17□□□□□ -2.6
SNHG28P0DPA3 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.18□□□□□ -2.6
SNHG28P0DPA3 MIR4748-201ENST00000578076 82 ntBASIC-1.18□□□□□ -2.6
SNHG28P0DPA3 RNU6-737P-201ENST00000365370 107 ntBASIC-1.2□□□□□ -2.6
SNHG28P0DPA3 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.2□□□□□ -2.6
SNHG28P0DPA3 MIR664B-201ENST00000626756 61 ntBASIC-1.2□□□□□ -2.6
SNHG28P0DPA3 RNU6-1043P-201ENST00000410355 99 ntBASIC-1.21□□□□□ -2.6
SNHG28P0DPA3 RNU6-118P-201ENST00000516552 102 ntBASIC-1.21□□□□□ -2.6
SNHG28P0DPA3 RNU6-1024P-201ENST00000384199 107 ntBASIC-1.22□□□□□ -2.6
SNHG28P0DPA3 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.23□□□□□ -2.61
SNHG28P0DPA3 RNA5SP266-201ENST00000410273 108 ntBASIC-1.23□□□□□ -2.61
SNHG28P0DPA3 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.24□□□□□ -2.61
SNHG28P0DPA3 MIR548T-201ENST00000408369 74 ntBASIC-1.24□□□□□ -2.61
SNHG28P0DPA3 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.25□□□□□ -2.61
SNHG28P0DPA3 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.25□□□□□ -2.61
SNHG28P0DPA3 AL731768.1-201ENST00000603124 139 ntBASIC-1.25□□□□□ -2.61
SNHG28P0DPA3 MIR4320-201ENST00000636981 65 ntBASIC-1.25□□□□□ -2.61
SNHG28P0DPA3 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.26□□□□□ -2.61
SNHG28P0DPA3 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.26□□□□□ -2.61
SNHG28P0DPA3 RNU6-422P-201ENST00000384632 107 ntBASIC-1.28□□□□□ -2.61
SNHG28P0DPA3 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.28□□□□□ -2.61
SNHG28P0DPA3 MIR548AH-201ENST00000637109 76 ntBASIC-1.28□□□□□ -2.61
SNHG28P0DPA3 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.29□□□□□ -2.62
SNHG28P0DPA3 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.29□□□□□ -2.62
SNHG28P0DPA3 RNA5SP405-201ENST00000363059 114 ntBASIC-1.32□□□□□ -2.62
SNHG28P0DPA3 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.33□□□□□ -2.62
SNHG28P0DPA3 RNA5SP461-201ENST00000516451 104 ntBASIC-1.33□□□□□ -2.62
SNHG28P0DPA3 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.34□□□□□ -2.62
SNHG28P0DPA3 RNU6-620P-201ENST00000384017 96 ntBASIC-1.34□□□□□ -2.62
SNHG28P0DPA3 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.34□□□□□ -2.62
SNHG28P0DPA3 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.34□□□□□ -2.62
SNHG28P0DPA3 RNU6-194P-201ENST00000363862 105 ntBASIC-1.35□□□□□ -2.63
SNHG28P0DPA3 RNA5SP331-201ENST00000364986 107 ntBASIC-1.36□□□□□ -2.63
SNHG28P0DPA3 SNORD115-45-201ENST00000391078 81 ntBASIC-1.36□□□□□ -2.63
SNHG28P0DPA3 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.37□□□□□ -2.63
SNHG28P0DPA3 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.38□□□□□ -2.63
SNHG28P0DPA3 RNY4P9-201ENST00000363194 97 ntBASIC-1.39□□□□□ -2.63
SNHG28P0DPA3 MIR198-201ENST00000637333 62 ntBASIC-1.39□□□□□ -2.63
SNHG28P0DPA3 MIR1246-201ENST00000636535 73 ntBASIC-1.41□□□□□ -2.64
SNHG28P0DPA3 SNX3P1X-201ENST00000414887 175 ntBASIC-1.42□□□□□ -2.64
SNHG28P0DPA3 AL359920.1-201ENST00000618332 176 ntBASIC-1.43□□□□□ -2.64
SNHG28P0DPA3 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.44□□□□□ -2.64
SNHG28P0DPA3 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.46□□□□□ -2.64
SNHG28P0DPA3 RNA5SP180-201ENST00000516181 101 ntBASIC-1.46□□□□□ -2.64
SNHG28P0DPA3 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.47□□□□□ -2.64
SNHG28P0DPA3 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.47□□□□□ -2.64
SNHG28P0DPA3 MIR601-201ENST00000385256 79 ntBASIC-1.48□□□□□ -2.65
SNHG28P0DPA3 AL627230.5-201ENST00000619807 58 ntBASIC-1.48□□□□□ -2.65
SNHG28P0DPA3 MIR3139-201ENST00000579145 76 ntBASIC-1.5□□□□□ -2.65
SNHG28P0DPA3 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.53□□□□□ -2.65
SNHG28P0DPA3 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.53□□□□□ -2.65
SNHG28P0DPA3 MIR5693-201ENST00000577722 73 ntBASIC-1.53□□□□□ -2.65
SNHG28P0DPA3 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.53□□□□□ -2.65
SNHG28P0DPA3 Y_RNA.137-201ENST00000363455 112 ntBASIC-1.54□□□□□ -2.66
SNHG28P0DPA3 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.54□□□□□ -2.66
SNHG28P0DPA3 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.54□□□□□ -2.66
SNHG28P0DPA3 MIR1285-2-201ENST00000408311 88 ntBASIC-1.54□□□□□ -2.66
SNHG28P0DPA3 RNY4P25-201ENST00000459254 96 ntBASIC-1.55□□□□□ -2.66
SNHG28P0DPA3 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.57□□□□□ -2.66
SNHG28P0DPA3 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.58□□□□□ -2.66
SNHG28P0DPA3 MT-TM-201ENST00000387377 68 ntBASIC-1.6□□□□□ -2.67
SNHG28P0DPA3 MIR365A-201ENST00000362260 87 ntBASIC-1.62□□□□□ -2.67
SNHG28P0DPA3 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.63□□□□□ -2.67
SNHG28P0DPA3 MIR4441-201ENST00000582623 100 ntBASIC-1.63□□□□□ -2.67
SNHG28P0DPA3 RNU6-627P-201ENST00000364032 102 ntBASIC-1.64□□□□□ -2.67
SNHG28P0DPA3 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.64□□□□□ -2.67
SNHG28P0DPA3 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.64□□□□□ -2.67
SNHG28P0DPA3 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.64□□□□□ -2.67
SNHG28P0DPA3 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.64□□□□□ -2.67
SNHG28P0DPA3 RNU6-230P-201ENST00000362457 104 ntBASIC-1.67□□□□□ -2.68
SNHG28P0DPA3 SNORD114-13-201ENST00000364377 74 ntBASIC-1.67□□□□□ -2.68
SNHG28P0DPA3 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.68□□□□□ -2.68
SNHG28P0DPA3 U4.2-201ENST00000618561 85 ntBASIC-1.69□□□□□ -2.68
SNHG28P0DPA3 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.7□□□□□ -2.68
SNHG28P0DPA3 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.71□□□□□ -2.68
SNHG28P0DPA3 SNORD114-3-201ENST00000364969 75 ntBASIC-1.73□□□□□ -2.69
SNHG28P0DPA3 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.74□□□□□ -2.69
SNHG28P0DPA3 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-1.79□□□□□ -2.7
SNHG28P0DPA3 RNA5SP449-201ENST00000516871 130 ntBASIC-1.81□□□□□ -2.7
SNHG28P0DPA3 MIR4723-201ENST00000585070 81 ntBASIC-1.81□□□□□ -2.7
SNHG28P0DPA3 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.83□□□□□ -2.7
SNHG28P0DPA3 RNY4P27-201ENST00000363341 96 ntBASIC-1.86□□□□□ -2.71
SNHG28P0DPA3 RNU4-85P-201ENST00000364675 123 ntBASIC-1.87□□□□□ -2.71
SNHG28P0DPA3 MIR1207-201ENST00000408249 87 ntBASIC-1.87□□□□□ -2.71
SNHG28P0DPA3 RNU6-892P-201ENST00000410335 99 ntBASIC-1.92□□□□□ -2.72
SNHG28P0DPA3 Y_RNA.165-201ENST00000363721 102 ntBASIC-1.93□□□□□ -2.72
SNHG28P0DPA3 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.94□□□□□ -2.72
SNHG28P0DPA3 MIR496-201ENST00000385226 102 ntBASIC-1.98□□□□□ -2.73
SNHG28P0DPA3 RNU6-119P-201ENST00000364882 107 ntBASIC-2□□□□□ -2.73
SNHG28P0DPA3 RNU6-665P-201ENST00000384639 107 ntBASIC-2.01□□□□□ -2.73
SNHG28P0DPA3 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.02□□□□□ -2.73
SNHG28P0DPA3 MIR509-1-201ENST00000385265 94 ntBASIC-2.13□□□□□ -2.75
SNHG28P0DPA3 MIR509-2-201ENST00000390724 91 ntBASIC-2.13□□□□□ -2.75
SNHG28P0DPA3 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.13□□□□□ -2.75
SNHG28P0DPA3 SNORD54-201ENST00000459159 67 ntBASIC-2.14□□□□□ -2.75
SNHG28P0DPA3 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.17□□□□□ -2.76
SNHG28P0DPA3 RNA5SP93-201ENST00000362525 114 ntBASIC-2.2□□□□□ -2.76
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms