Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SNORD45C-201ENST00000383893 79 ntBASIC-0.63□□□□□ -2.51
COL3A1P02461 MIR4306-201ENST00000583390 91 ntBASIC-0.63□□□□□ -2.51
COL3A1P02461 MIR3123-201ENST00000583417 75 ntBASIC-0.63□□□□□ -2.51
COL3A1P02461 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.64□□□□□ -2.51
COL3A1P02461 RNU6-706P-201ENST00000517229 104 ntBASIC-0.64□□□□□ -2.51
COL3A1P02461 Y_RNA.175-201ENST00000363794 111 ntBASIC-0.65□□□□□ -2.51
COL3A1P02461 RNU6-226P-201ENST00000363778 107 ntBASIC-0.66□□□□□ -2.51
COL3A1P02461 Y_RNA.225-201ENST00000364326 97 ntBASIC-0.66□□□□□ -2.51
COL3A1P02461 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.66□□□□□ -2.51
COL3A1P02461 MIR8485-201ENST00000401372 91 ntBASIC-0.66□□□□□ -2.51
COL3A1P02461 RNU6-894P-201ENST00000517094 105 ntBASIC-0.66□□□□□ -2.51
COL3A1P02461 Y_RNA.519-201ENST00000384553 102 ntBASIC-0.67□□□□□ -2.52
COL3A1P02461 MIR6502-201ENST00000617296 76 ntBASIC-0.67□□□□□ -2.52
COL3A1P02461 snoU13.10-201ENST00000459301 103 ntBASIC-0.67□□□□□ -2.52
COL3A1P02461 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.68□□□□□ -2.52
COL3A1P02461 MIR1254-1-201ENST00000408257 97 ntBASIC-0.68□□□□□ -2.52
COL3A1P02461 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.68□□□□□ -2.52
COL3A1P02461 RNU6-841P-201ENST00000383872 107 ntBASIC-0.69□□□□□ -2.52
COL3A1P02461 MIR656-201ENST00000385224 78 ntBASIC-0.69□□□□□ -2.52
COL3A1P02461 MIR548W-201ENST00000581970 74 ntBASIC-0.69□□□□□ -2.52
COL3A1P02461 Y_RNA.434-201ENST00000384090 100 ntBASIC-0.7□□□□□ -2.52
COL3A1P02461 HLA-S-202ENST00000425174 53 ntBASIC-0.7□□□□□ -2.52
COL3A1P02461 Y_RNA.406-201ENST00000383984 100 ntBASIC-0.73□□□□□ -2.53
COL3A1P02461 RNU6-1340P-201ENST00000384438 107 ntBASIC-0.73□□□□□ -2.53
COL3A1P02461 RNU6-983P-201ENST00000516004 103 ntBASIC-0.73□□□□□ -2.53
COL3A1P02461 RNU6-118P-201ENST00000516552 102 ntBASIC-0.73□□□□□ -2.53
COL3A1P02461 RNU6-1121P-201ENST00000516802 109 ntBASIC-0.74□□□□□ -2.53
COL3A1P02461 MIR548AM-201ENST00000584298 74 ntBASIC-0.74□□□□□ -2.53
COL3A1P02461 Y_RNA.186-201ENST00000363899 92 ntBASIC-0.75□□□□□ -2.53
COL3A1P02461 MIR5591-201ENST00000578248 65 ntBASIC-0.75□□□□□ -2.53
COL3A1P02461 Y_RNA.103-201ENST00000363171 102 ntBASIC-0.76□□□□□ -2.53
COL3A1P02461 RNU6-1091P-201ENST00000363945 107 ntBASIC-0.77□□□□□ -2.53
COL3A1P02461 SNORD113-3-201ENST00000364830 72 ntBASIC-0.77□□□□□ -2.53
COL3A1P02461 AC097484.2-201ENST00000509147 251 ntBASIC-0.77□□□□□ -2.53
COL3A1P02461 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.77□□□□□ -2.53
COL3A1P02461 MIR4520-1-201ENST00000582609 70 ntBASIC-0.78□□□□□ -2.53
COL3A1P02461 Y_RNA.566-201ENST00000384735 101 ntBASIC-0.79□□□□□ -2.54
COL3A1P02461 MIR4770-201ENST00000579149 58 ntBASIC-0.79□□□□□ -2.54
COL3A1P02461 Y_RNA.647-201ENST00000459194 112 ntBASIC-0.8□□□□□ -2.54
COL3A1P02461 Y_RNA.640-201ENST00000459296 112 ntBASIC-0.8□□□□□ -2.54
COL3A1P02461 Y_RNA.803-201ENST00000614432 112 ntBASIC-0.8□□□□□ -2.54
COL3A1P02461 Y_RNA.815-201ENST00000616655 112 ntBASIC-0.8□□□□□ -2.54
COL3A1P02461 Y_RNA.795-201ENST00000619475 112 ntBASIC-0.8□□□□□ -2.54
COL3A1P02461 Y_RNA.827-201ENST00000638104 112 ntBASIC-0.8□□□□□ -2.54
COL3A1P02461 RNU6-1191P-201ENST00000516799 107 ntBASIC-0.82□□□□□ -2.54
COL3A1P02461 RNA5SP86-201ENST00000390869 98 ntBASIC-0.9□□□□□ -2.55
COL3A1P02461 Y_RNA.501-201ENST00000384467 103 ntBASIC-0.92□□□□□ -2.56
COL3A1P02461 MIR487B-201ENST00000385021 84 ntBASIC-0.92□□□□□ -2.56
COL3A1P02461 Y_RNA.63-201ENST00000362841 102 ntBASIC-0.94□□□□□ -2.56
COL3A1P02461 SNORD18.1-201ENST00000363807 70 ntBASIC-0.95□□□□□ -2.56
COL3A1P02461 MIRLET7A2-201ENST00000362105 72 ntBASIC-0.97□□□□□ -2.56
COL3A1P02461 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.97□□□□□ -2.56
COL3A1P02461 MIR3139-201ENST00000579145 76 ntBASIC-0.97□□□□□ -2.56
COL3A1P02461 RNU6-422P-201ENST00000384632 107 ntBASIC-0.99□□□□□ -2.57
COL3A1P02461 MT-TM-201ENST00000387377 68 ntBASIC-1□□□□□ -2.57
COL3A1P02461 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.01□□□□□ -2.57
COL3A1P02461 AC108019.1-201ENST00000512540 175 ntBASIC-1.01□□□□□ -2.57
COL3A1P02461 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.02□□□□□ -2.57
COL3A1P02461 RNU6-854P-201ENST00000364036 107 ntBASIC-1.03□□□□□ -2.57
COL3A1P02461 MIR4756-201ENST00000577874 78 ntBASIC-1.03□□□□□ -2.57
COL3A1P02461 MIR548T-201ENST00000408369 74 ntBASIC-1.04□□□□□ -2.58
COL3A1P02461 MIR4748-201ENST00000578076 82 ntBASIC-1.05□□□□□ -2.58
COL3A1P02461 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.06□□□□□ -2.58
COL3A1P02461 RNU6-1043P-201ENST00000410355 99 ntBASIC-1.06□□□□□ -2.58
COL3A1P02461 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.06□□□□□ -2.58
COL3A1P02461 MIR664B-201ENST00000626756 61 ntBASIC-1.08□□□□□ -2.58
COL3A1P02461 RNU6-803P-201ENST00000516034 102 ntBASIC-1.09□□□□□ -2.58
COL3A1P02461 RNU6-737P-201ENST00000365370 107 ntBASIC-1.11□□□□□ -2.59
COL3A1P02461 RNY4P9-201ENST00000363194 97 ntBASIC-1.12□□□□□ -2.59
COL3A1P02461 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.12□□□□□ -2.59
COL3A1P02461 RNU6-620P-201ENST00000384017 96 ntBASIC-1.12□□□□□ -2.59
COL3A1P02461 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.12□□□□□ -2.59
COL3A1P02461 AL731768.1-201ENST00000603124 139 ntBASIC-1.12□□□□□ -2.59
COL3A1P02461 RNU6-194P-201ENST00000363862 105 ntBASIC-1.13□□□□□ -2.59
COL3A1P02461 RNA5SP405-201ENST00000363059 114 ntBASIC-1.14□□□□□ -2.59
COL3A1P02461 RNU6-1024P-201ENST00000384199 107 ntBASIC-1.16□□□□□ -2.59
COL3A1P02461 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.16□□□□□ -2.59
COL3A1P02461 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.2□□□□□ -2.6
COL3A1P02461 Y_RNA.137-201ENST00000363455 112 ntBASIC-1.21□□□□□ -2.6
COL3A1P02461 MIR124-1-201ENST00000385275 85 ntBASIC-1.21□□□□□ -2.6
COL3A1P02461 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.21□□□□□ -2.6
COL3A1P02461 RNU6-627P-201ENST00000364032 102 ntBASIC-1.22□□□□□ -2.6
COL3A1P02461 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.22□□□□□ -2.6
COL3A1P02461 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.23□□□□□ -2.61
COL3A1P02461 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.24□□□□□ -2.61
COL3A1P02461 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.24□□□□□ -2.61
COL3A1P02461 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.25□□□□□ -2.61
COL3A1P02461 Y_RNA.658-201ENST00000515990 97 ntBASIC-1.25□□□□□ -2.61
COL3A1P02461 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.26□□□□□ -2.61
COL3A1P02461 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.27□□□□□ -2.61
COL3A1P02461 RNU6-230P-201ENST00000362457 104 ntBASIC-1.29□□□□□ -2.62
COL3A1P02461 AL359920.1-201ENST00000618332 176 ntBASIC-1.31□□□□□ -2.62
COL3A1P02461 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.33□□□□□ -2.62
COL3A1P02461 Y_RNA.511-201ENST00000384514 103 ntBASIC-1.34□□□□□ -2.62
COL3A1P02461 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.34□□□□□ -2.62
COL3A1P02461 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.36□□□□□ -2.63
COL3A1P02461 RNY4P25-201ENST00000459254 96 ntBASIC-1.36□□□□□ -2.63
COL3A1P02461 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.37□□□□□ -2.63
COL3A1P02461 MIR548AH-201ENST00000637109 76 ntBASIC-1.39□□□□□ -2.63
COL3A1P02461 SNORD115-45-201ENST00000391078 81 ntBASIC-1.43□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 9.3 ms