Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SNORD18C-201ENST00000362704 69 ntBASIC0.2□□□□□ -2.38
SENP3-EIF4A1A0A087X0R7 MIR204-201ENST00000385200 110 ntBASIC0.2□□□□□ -2.38
SENP3-EIF4A1A0A087X0R7 SNORD114-11-201ENST00000363738 75 ntBASIC0.19□□□□□ -2.38
SENP3-EIF4A1A0A087X0R7 RNU4-63P-201ENST00000411313 118 ntBASIC0.18□□□□□ -2.38
SENP3-EIF4A1A0A087X0R7 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC0.17□□□□□ -2.38
SENP3-EIF4A1A0A087X0R7 Y_RNA.684-201ENST00000516510 99 ntBASIC0.17□□□□□ -2.38
SENP3-EIF4A1A0A087X0R7 SNORA18.1-201ENST00000363418 128 ntBASIC0.16□□□□□ -2.38
SENP3-EIF4A1A0A087X0R7 MIR1295A-201ENST00000408463 79 ntBASIC0.16□□□□□ -2.38
SENP3-EIF4A1A0A087X0R7 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC0.16□□□□□ -2.38
SENP3-EIF4A1A0A087X0R7 RNU6-79P-201ENST00000362511 107 ntBASIC0.15□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 SNORA32.1-201ENST00000364514 115 ntBASIC0.15□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 SNORD114-12-201ENST00000365400 75 ntBASIC0.15□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 MIR1295B-201ENST00000636144 60 ntBASIC0.15□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.335-201ENST00000365299 96 ntBASIC0.14□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 RNU6-1324P-201ENST00000384222 107 ntBASIC0.14□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 MIR1254-1-201ENST00000408257 97 ntBASIC0.14□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 MIR4290-201ENST00000583807 95 ntBASIC0.14□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 MIR3666-201ENST00000607845 111 ntBASIC0.14□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.781-201ENST00000620301 103 ntBASIC0.14□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 SNORD114-16-201ENST00000363044 70 ntBASIC0.13□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 RNU6-431P-201ENST00000383874 107 ntBASIC0.12□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.434-201ENST00000384090 100 ntBASIC0.12□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 MIR4667-201ENST00000578933 66 ntBASIC0.12□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 AC018880.2-201ENST00000414265 201 ntBASIC0.11□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 MIR4788-201ENST00000639104 80 ntBASIC0.11□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 RNU7-134P-201ENST00000458997 64 ntBASIC0.1□□□□□ -2.39
SENP3-EIF4A1A0A087X0R7 MIR656-201ENST00000385224 78 ntBASIC0.09□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 SNORD64-201ENST00000386683 67 ntBASIC0.09□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 AL500527.2-201ENST00000454105 95 ntBASIC0.09□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC0.09□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 Y_RNA.228-201ENST00000364346 98 ntBASIC0.07□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 MIR147A-201ENST00000385079 72 ntBASIC0.07□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 MIR6818-201ENST00000621576 65 ntBASIC0.07□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 MIR8064-201ENST00000612863 90 ntBASIC0.06□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 MIR587-201ENST00000384845 96 ntBASIC0.05□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 RNA5SP300-201ENST00000391197 107 ntBASIC0.04□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 Y_RNA.55-201ENST00000362797 102 ntBASIC0.03□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 RNU6-164P-201ENST00000364604 103 ntBASIC0.03□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 Y_RNA.484-201ENST00000384389 103 ntBASIC0.03□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 MIR548H1-201ENST00000408610 102 ntBASIC0.03□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 SNORD4A-201ENST00000459174 72 ntBASIC0.03□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 AC021146.6-201ENST00000514659 117 ntBASIC0.03□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 RNU6-345P-201ENST00000517001 107 ntBASIC0.03□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 MIR4436A-201ENST00000585278 85 ntBASIC0.03□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 SNORD19B.1-201ENST00000630615 80 ntBASIC0.03□□□□□ -2.4
SENP3-EIF4A1A0A087X0R7 RNY4P27-201ENST00000363341 96 ntBASIC0.01□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 MIR6874-201ENST00000635894 71 ntBASIC0.01□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 SNORD113-3-201ENST00000364830 72 ntBASIC0□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 RNU6-1024P-201ENST00000384199 107 ntBASIC0□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 RNU6-1340P-201ENST00000384438 107 ntBASIC0□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 MIR382-201ENST00000637119 76 ntBASIC0□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.01□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.01□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 RNU6-284P-201ENST00000411105 106 ntBASIC-0.01□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.01□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 AC091912.2-201ENST00000624798 167 ntBASIC-0.01□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 SNORD114-25-201ENST00000363742 72 ntBASIC-0.02□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 RNY4P7-201ENST00000364600 96 ntBASIC-0.02□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 Y_RNA.449-201ENST00000384187 102 ntBASIC-0.02□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 snoU13.10-201ENST00000459301 103 ntBASIC-0.02□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 RNU6-620P-201ENST00000384017 96 ntBASIC-0.03□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 SNORA3B-201ENST00000391305 131 ntBASIC-0.03□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 MIR548W-201ENST00000581970 74 ntBASIC-0.03□□□□□ -2.41
SENP3-EIF4A1A0A087X0R7 Y_RNA.63-201ENST00000362841 102 ntBASIC-0.04□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 RNU6-854P-201ENST00000364036 107 ntBASIC-0.04□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.04□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 MIR365A-201ENST00000362260 87 ntBASIC-0.05□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.05□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 MIR378F-201ENST00000578143 78 ntBASIC-0.06□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 MIRLET7A2-201ENST00000362105 72 ntBASIC-0.07□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.07□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 MIR196A2-201ENST00000385189 110 ntBASIC-0.08□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.09□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.09□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 MT-TQ-201ENST00000387372 72 ntBASIC-0.09□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 snoU83B.1-201ENST00000517136 88 ntBASIC-0.09□□□□□ -2.42
SENP3-EIF4A1A0A087X0R7 MIR3123-201ENST00000583417 75 ntBASIC-0.1□□□□□ -2.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.59-201ENST00000362828 102 ntBASIC-0.11□□□□□ -2.43
SENP3-EIF4A1A0A087X0R7 MIR8485-201ENST00000401372 91 ntBASIC-0.11□□□□□ -2.43
SENP3-EIF4A1A0A087X0R7 RNU6-1043P-201ENST00000410355 99 ntBASIC-0.12□□□□□ -2.43
SENP3-EIF4A1A0A087X0R7 SNORD114-14-201ENST00000362723 75 ntBASIC-0.13□□□□□ -2.43
SENP3-EIF4A1A0A087X0R7 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.13□□□□□ -2.43
SENP3-EIF4A1A0A087X0R7 RNU6-576P-201ENST00000390854 102 ntBASIC-0.14□□□□□ -2.43
SENP3-EIF4A1A0A087X0R7 RNU6-400P-201ENST00000391173 106 ntBASIC-0.15□□□□□ -2.43
SENP3-EIF4A1A0A087X0R7 RNU6-422P-201ENST00000384632 107 ntBASIC-0.16□□□□□ -2.44
SENP3-EIF4A1A0A087X0R7 SNORD126-201ENST00000459475 77 ntBASIC-0.16□□□□□ -2.44
SENP3-EIF4A1A0A087X0R7 MIR4441-201ENST00000582623 100 ntBASIC-0.16□□□□□ -2.44
SENP3-EIF4A1A0A087X0R7 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.18□□□□□ -2.44
SENP3-EIF4A1A0A087X0R7 MIR3681-201ENST00000580089 72 ntBASIC-0.19□□□□□ -2.44
SENP3-EIF4A1A0A087X0R7 RNU6-983P-201ENST00000516004 103 ntBASIC-0.2□□□□□ -2.44
SENP3-EIF4A1A0A087X0R7 RNU6-320P-201ENST00000516511 106 ntBASIC-0.2□□□□□ -2.44
SENP3-EIF4A1A0A087X0R7 SNORD14C-201ENST00000365382 88 ntBASIC-0.21□□□□□ -2.44
SENP3-EIF4A1A0A087X0R7 MIR124-1-201ENST00000385275 85 ntBASIC-0.22□□□□□ -2.44
SENP3-EIF4A1A0A087X0R7 AC097484.2-201ENST00000509147 251 ntBASIC-0.22□□□□□ -2.44
SENP3-EIF4A1A0A087X0R7 Y_RNA.103-201ENST00000363171 102 ntBASIC-0.23□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.175-201ENST00000363794 111 ntBASIC-0.23□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 RNU6-10P-201ENST00000384036 107 ntBASIC-0.23□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.647-201ENST00000459194 112 ntBASIC-0.23□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.640-201ENST00000459296 112 ntBASIC-0.23□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.803-201ENST00000614432 112 ntBASIC-0.23□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms