Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.56□□□□□ -2.66
CDX1P47902 MIR548AA1-201ENST00000384971 97 ntBASIC-1.56□□□□□ -2.66
CDX1P47902 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.56□□□□□ -2.66
CDX1P47902 AC013734.1-201ENST00000619329 111 ntBASIC-1.56□□□□□ -2.66
CDX1P47902 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.57□□□□□ -2.66
CDX1P47902 MIR664A-201ENST00000626086 82 ntBASIC-1.57□□□□□ -2.66
CDX1P47902 RNA5SP405-201ENST00000363059 114 ntBASIC-1.58□□□□□ -2.66
CDX1P47902 RNU6-194P-201ENST00000363862 105 ntBASIC-1.58□□□□□ -2.66
CDX1P47902 RNU6-242P-201ENST00000384359 107 ntBASIC-1.58□□□□□ -2.66
CDX1P47902 SNORD45A-201ENST00000384512 84 ntBASIC-1.58□□□□□ -2.66
CDX1P47902 RNU7-171P-201ENST00000459581 62 ntBASIC-1.58□□□□□ -2.66
CDX1P47902 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.58□□□□□ -2.66
CDX1P47902 RNU6-153P-201ENST00000364422 104 ntBASIC-1.59□□□□□ -2.66
CDX1P47902 SNORD115-31-201ENST00000365318 82 ntBASIC-1.59□□□□□ -2.66
CDX1P47902 MIR630-201ENST00000384957 97 ntBASIC-1.59□□□□□ -2.66
CDX1P47902 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.59□□□□□ -2.66
CDX1P47902 AC005520.4-201ENST00000604337 90 ntBASIC-1.59□□□□□ -2.66
CDX1P47902 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.6□□□□□ -2.67
CDX1P47902 SNORD116-16-201ENST00000384533 92 ntBASIC-1.6□□□□□ -2.67
CDX1P47902 SNORD113-2-201ENST00000391082 72 ntBASIC-1.6□□□□□ -2.67
CDX1P47902 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.6□□□□□ -2.67
CDX1P47902 MIR548W-201ENST00000581970 74 ntBASIC-1.6□□□□□ -2.67
CDX1P47902 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.6□□□□□ -2.67
CDX1P47902 U6.97-201ENST00000636904 101 ntBASIC-1.6□□□□□ -2.67
CDX1P47902 MIR494-201ENST00000349529 81 ntBASIC-1.61□□□□□ -2.67
CDX1P47902 SNORD1B-201ENST00000363091 84 ntBASIC-1.61□□□□□ -2.67
CDX1P47902 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.61□□□□□ -2.67
CDX1P47902 snoU13.10-201ENST00000459301 103 ntBASIC-1.61□□□□□ -2.67
CDX1P47902 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.61□□□□□ -2.67
CDX1P47902 MIR1245B-201ENST00000636115 69 ntBASIC-1.61□□□□□ -2.67
CDX1P47902 SNORA27.2-201ENST00000363365 126 ntBASIC-1.62□□□□□ -2.67
CDX1P47902 RNU6-119P-201ENST00000364882 107 ntBASIC-1.62□□□□□ -2.67
CDX1P47902 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.62□□□□□ -2.67
CDX1P47902 MIR450A2-201ENST00000385022 100 ntBASIC-1.62□□□□□ -2.67
CDX1P47902 RNU6-70P-201ENST00000516438 60 ntBASIC-1.62□□□□□ -2.67
CDX1P47902 RNU6-118P-201ENST00000516552 102 ntBASIC-1.62□□□□□ -2.67
CDX1P47902 RNA5SP173-201ENST00000364857 136 ntBASIC-1.63□□□□□ -2.67
CDX1P47902 SNORD63.2-201ENST00000516303 64 ntBASIC-1.63□□□□□ -2.67
CDX1P47902 RNU7-151P-201ENST00000516930 53 ntBASIC-1.63□□□□□ -2.67
CDX1P47902 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.63□□□□□ -2.67
CDX1P47902 RNU6-294P-201ENST00000364999 102 ntBASIC-1.64□□□□□ -2.67
CDX1P47902 RNU6-669P-201ENST00000365575 107 ntBASIC-1.64□□□□□ -2.67
CDX1P47902 SNORA41B-201ENST00000384785 128 ntBASIC-1.64□□□□□ -2.67
CDX1P47902 MIR154-201ENST00000385243 84 ntBASIC-1.64□□□□□ -2.67
CDX1P47902 RNU6-995P-201ENST00000391244 107 ntBASIC-1.64□□□□□ -2.67
CDX1P47902 RNY3P8-201ENST00000411366 126 ntBASIC-1.64□□□□□ -2.67
CDX1P47902 MIR4712-201ENST00000583750 82 ntBASIC-1.64□□□□□ -2.67
CDX1P47902 MIR466-201ENST00000580653 84 ntBASIC-1.65□□□□□ -2.67
CDX1P47902 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.66□□□□□ -2.68
CDX1P47902 RNU6-895P-201ENST00000384125 103 ntBASIC-1.66□□□□□ -2.68
CDX1P47902 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.66□□□□□ -2.68
CDX1P47902 MIR579-201ENST00000385221 98 ntBASIC-1.66□□□□□ -2.68
CDX1P47902 MIR3139-201ENST00000579145 76 ntBASIC-1.66□□□□□ -2.68
CDX1P47902 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.66□□□□□ -2.68
CDX1P47902 MIR7978-201ENST00000636158 59 ntBASIC-1.67□□□□□ -2.68
CDX1P47902 RNU6-523P-201ENST00000516304 54 ntBASIC-1.68□□□□□ -2.68
CDX1P47902 RNU6-172P-201ENST00000411000 93 ntBASIC-1.69□□□□□ -2.68
CDX1P47902 MIR4748-201ENST00000578076 82 ntBASIC-1.69□□□□□ -2.68
CDX1P47902 SNORD18C-201ENST00000362704 69 ntBASIC-1.7□□□□□ -2.68
CDX1P47902 RNU6-974P-201ENST00000384099 108 ntBASIC-1.7□□□□□ -2.68
CDX1P47902 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.7□□□□□ -2.68
CDX1P47902 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.7□□□□□ -2.68
CDX1P47902 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.71□□□□□ -2.68
CDX1P47902 MIR125B1-201ENST00000385236 88 ntBASIC-1.71□□□□□ -2.68
CDX1P47902 MT-TM-201ENST00000387377 68 ntBASIC-1.71□□□□□ -2.68
CDX1P47902 FTX_4.1-201ENST00000616291 147 ntBASIC-1.71□□□□□ -2.68
CDX1P47902 MIR581-201ENST00000384895 96 ntBASIC-1.72□□□□□ -2.68
CDX1P47902 AC097484.2-201ENST00000509147 251 ntBASIC-1.72□□□□□ -2.68
CDX1P47902 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.72□□□□□ -2.68
CDX1P47902 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.72□□□□□ -2.68
CDX1P47902 MIR4666B-201ENST00000578142 81 ntBASIC-1.73□□□□□ -2.69
CDX1P47902 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 RNU6-820P-201ENST00000384273 107 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 MIR5582-201ENST00000579697 68 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.74□□□□□ -2.69
CDX1P47902 MIR202-201ENST00000362219 110 ntBASIC-1.76□□□□□ -2.69
CDX1P47902 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.76□□□□□ -2.69
CDX1P47902 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.76□□□□□ -2.69
CDX1P47902 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.76□□□□□ -2.69
CDX1P47902 SNORD60-201ENST00000383903 83 ntBASIC-1.76□□□□□ -2.69
CDX1P47902 RNU6-520P-201ENST00000384717 104 ntBASIC-1.76□□□□□ -2.69
CDX1P47902 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.77□□□□□ -2.69
CDX1P47902 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.77□□□□□ -2.69
CDX1P47902 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.78□□□□□ -2.69
CDX1P47902 RNU6-649P-201ENST00000384463 107 ntBASIC-1.78□□□□□ -2.69
CDX1P47902 MIR548N-201ENST00000408742 75 ntBASIC-1.78□□□□□ -2.69
CDX1P47902 MIR3134-201ENST00000579433 74 ntBASIC-1.78□□□□□ -2.69
CDX1P47902 RNY4P9-201ENST00000363194 97 ntBASIC-1.79□□□□□ -2.7
CDX1P47902 MIR496-201ENST00000385226 102 ntBASIC-1.79□□□□□ -2.7
CDX1P47902 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.8□□□□□ -2.7
CDX1P47902 SNORD116-24-201ENST00000384549 92 ntBASIC-1.8□□□□□ -2.7
CDX1P47902 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.8□□□□□ -2.7
CDX1P47902 RNU7-160P-201ENST00000516660 62 ntBASIC-1.81□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 168.9 ms