Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 Y_RNA.790-201ENST00000614282 102 ntBASIC0.53□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 Y_RNA.782-201ENST00000614695 102 ntBASIC0.53□□□□□ -2.32
SENP3-EIF4A1A0A087X0R7 SNORD56B-201ENST00000384713 71 ntBASIC0.52□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 MIR610-201ENST00000385139 96 ntBASIC0.52□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 SNORA17.4-201ENST00000391287 132 ntBASIC0.52□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 RPS29P8-201ENST00000445109 171 ntBASIC0.52□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 MIR101-1-201ENST00000362265 75 ntBASIC0.51□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 RNU6-1327P-201ENST00000365302 105 ntBASIC0.5□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 MIR4315-1-201ENST00000636800 73 ntBASIC0.49□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 MIR4315-2-201ENST00000640925 73 ntBASIC0.49□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 RNU6-46P-201ENST00000383860 107 ntBASIC0.48□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 AC244250.2-201ENST00000418731 148 ntBASIC0.48□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 MIR5683-201ENST00000636514 76 ntBASIC0.48□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 MIR581-201ENST00000384895 96 ntBASIC0.47□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 RPL35AP4-201ENST00000412007 102 ntBASIC0.47□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 RNU7-159P-201ENST00000459284 62 ntBASIC0.47□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 MIR4280-201ENST00000582178 76 ntBASIC0.47□□□□□ -2.33
SENP3-EIF4A1A0A087X0R7 Y_RNA.382-201ENST00000365672 114 ntBASIC0.46□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 AC013734.1-201ENST00000619329 111 ntBASIC0.46□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 Y_RNA.514-201ENST00000384528 112 ntBASIC0.45□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 MIR593-201ENST00000384856 100 ntBASIC0.45□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 RNU7-165P-201ENST00000458864 60 ntBASIC0.45□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 Y_RNA.134-201ENST00000363435 105 ntBASIC0.44□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 AL445193.1-201ENST00000441183 141 ntBASIC0.44□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.44□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 MIR655-201ENST00000362159 97 ntBASIC0.43□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 SNORD115.2-201ENST00000391126 59 ntBASIC0.43□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 SNORA26.4-201ENST00000391188 123 ntBASIC0.43□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 AL353691.2-201ENST00000443795 59 ntBASIC0.43□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 RNU6-68P-201ENST00000516576 104 ntBASIC0.43□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 SNORD38.3-201ENST00000516599 73 ntBASIC0.43□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 Y_RNA.468-201ENST00000384298 102 ntBASIC0.42□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 MIR548N-201ENST00000408742 75 ntBASIC0.42□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 SNORD74.6-201ENST00000364796 70 ntBASIC0.41□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 Y_RNA.320-201ENST00000365144 102 ntBASIC0.41□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 SNORD60-201ENST00000383903 83 ntBASIC0.41□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 MIR145-201ENST00000384967 88 ntBASIC0.41□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 SNORD18.2-201ENST00000459604 70 ntBASIC0.41□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 RNU6-176P-201ENST00000517196 105 ntBASIC0.41□□□□□ -2.34
SENP3-EIF4A1A0A087X0R7 SNORD115-33-201ENST00000363723 82 ntBASIC0.39□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.223-201ENST00000364290 113 ntBASIC0.39□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 MIR6851-201ENST00000617060 67 ntBASIC0.39□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 U6.97-201ENST00000636904 101 ntBASIC0.39□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 SNORD114-3-201ENST00000364969 75 ntBASIC0.38□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 RNU6-1091P-201ENST00000363945 107 ntBASIC0.37□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 RNU6-563P-201ENST00000364872 108 ntBASIC0.37□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.603-201ENST00000410571 108 ntBASIC0.37□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC0.37□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC0.37□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.519-201ENST00000384553 102 ntBASIC0.36□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 MIR224-201ENST00000384889 81 ntBASIC0.36□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 RNA5SP214-201ENST00000363378 118 ntBASIC0.35□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 SNORD114-17-201ENST00000364699 75 ntBASIC0.35□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 MIR507-201ENST00000385234 94 ntBASIC0.35□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 SNORD22.1-201ENST00000516331 125 ntBASIC0.35□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 MIR4768-201ENST00000585270 74 ntBASIC0.35□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 MIR371B-201ENST00000638082 66 ntBASIC0.35□□□□□ -2.35
SENP3-EIF4A1A0A087X0R7 MIR548T-201ENST00000408369 74 ntBASIC0.33□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 MIR518B-201ENST00000385127 83 ntBASIC0.32□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 AC090616.4-201ENST00000448026 115 ntBASIC0.32□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 RNA5SP66-201ENST00000517178 101 ntBASIC0.32□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 AC120024.2-201ENST00000576526 175 ntBASIC0.32□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 RNU6-836P-201ENST00000362920 107 ntBASIC0.31□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 MIR548AJ2-201ENST00000408539 92 ntBASIC0.31□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 RNU6-1169P-201ENST00000363537 103 ntBASIC0.3□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 RNU6-695P-201ENST00000391157 104 ntBASIC0.3□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 SNORD114-5-201ENST00000362928 70 ntBASIC0.29□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 SNORD114-9-201ENST00000364370 72 ntBASIC0.29□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 RNA5SP224-201ENST00000365069 126 ntBASIC0.29□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 AP000533.3-201ENST00000447704 118 ntBASIC0.29□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 AC093726.3-201ENST00000637588 150 ntBASIC0.29□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 RNA5SP26-201ENST00000362406 119 ntBASIC0.28□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 RNU6-912P-201ENST00000363800 104 ntBASIC0.28□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.28□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 RNA5SP451-201ENST00000410588 110 ntBASIC0.28□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 MIR4645-201ENST00000583158 77 ntBASIC0.28□□□□□ -2.36
SENP3-EIF4A1A0A087X0R7 Y_RNA.129-201ENST00000363392 110 ntBASIC0.27□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 RNU6-929P-201ENST00000384429 107 ntBASIC0.27□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 SNORD75.1-201ENST00000408373 60 ntBASIC0.27□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIR5093-201ENST00000583199 100 ntBASIC0.27□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIR4263-201ENST00000584745 83 ntBASIC0.27□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 AL590491.3-201ENST00000610731 82 ntBASIC0.27□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 Y_RNA.583-201ENST00000391033 113 ntBASIC0.26□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 Y_RNA.189-201ENST00000363959 112 ntBASIC0.25□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 SNORA13-201ENST00000458790 133 ntBASIC0.25□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 Y_RNA.260-201ENST00000364628 101 ntBASIC0.24□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIR3179-1-201ENST00000578940 84 ntBASIC0.24□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIR3179-2-201ENST00000579107 84 ntBASIC0.24□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIR3179-3-201ENST00000579566 84 ntBASIC0.24□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIR3179-4-201ENST00000617599 84 ntBASIC0.24□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIR23C-201ENST00000579846 100 ntBASIC0.23□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC0.23□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 FTX_4.1-201ENST00000616291 147 ntBASIC0.23□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.23□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 SNORD114-28-201ENST00000363610 72 ntBASIC0.22□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 Y_RNA.406-201ENST00000383984 100 ntBASIC0.22□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIR214-201ENST00000385214 110 ntBASIC0.22□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIR4320-201ENST00000636981 65 ntBASIC0.22□□□□□ -2.37
SENP3-EIF4A1A0A087X0R7 MIR379-201ENST00000362218 67 ntBASIC0.21□□□□□ -2.38
SENP3-EIF4A1A0A087X0R7 SNORD45C-201ENST00000383893 79 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms