Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 SNORD60-201ENST00000383903 83 ntBASIC1□□□□□ -2.25
CCDC61Q9Y6R9 MIR508-201ENST00000384857 115 ntBASIC1□□□□□ -2.25
CCDC61Q9Y6R9 MIR643-201ENST00000385267 97 ntBASIC1□□□□□ -2.25
CCDC61Q9Y6R9 MIR4653-201ENST00000585107 83 ntBASIC1□□□□□ -2.25
CCDC61Q9Y6R9 MIR6866-201ENST00000638146 69 ntBASIC1□□□□□ -2.25
CCDC61Q9Y6R9 RNA5SP163-201ENST00000410304 99 ntBASIC0.98□□□□□ -2.25
CCDC61Q9Y6R9 SNORD56B-201ENST00000384713 71 ntBASIC0.97□□□□□ -2.25
CCDC61Q9Y6R9 MIR936-201ENST00000401264 98 ntBASIC0.97□□□□□ -2.25
CCDC61Q9Y6R9 AL353691.2-201ENST00000443795 59 ntBASIC0.97□□□□□ -2.25
CCDC61Q9Y6R9 AC114755.3-201ENST00000481111 251 ntBASIC0.97□□□□□ -2.25
CCDC61Q9Y6R9 RNU6-608P-201ENST00000383927 104 ntBASIC0.96□□□□□ -2.26
CCDC61Q9Y6R9 RPL39P28-201ENST00000465655 155 ntBASIC0.96□□□□□ -2.26
CCDC61Q9Y6R9 MIR103A1-201ENST00000362165 78 ntBASIC0.95□□□□□ -2.26
CCDC61Q9Y6R9 Y_RNA.30-201ENST00000362572 97 ntBASIC0.95□□□□□ -2.26
CCDC61Q9Y6R9 RNU6-180P-201ENST00000516697 61 ntBASIC0.95□□□□□ -2.26
CCDC61Q9Y6R9 AP002795.1-201ENST00000534879 84 ntBASIC0.95□□□□□ -2.26
CCDC61Q9Y6R9 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.95□□□□□ -2.26
CCDC61Q9Y6R9 SNORA26.4-201ENST00000391188 123 ntBASIC0.93□□□□□ -2.26
CCDC61Q9Y6R9 MIR892B-201ENST00000401279 77 ntBASIC0.93□□□□□ -2.26
CCDC61Q9Y6R9 RNU6-815P-201ENST00000384080 113 ntBASIC0.92□□□□□ -2.26
CCDC61Q9Y6R9 RNA5SP193-201ENST00000410353 107 ntBASIC0.92□□□□□ -2.26
CCDC61Q9Y6R9 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
CCDC61Q9Y6R9 SNORA68.3-201ENST00000515906 83 ntBASIC0.91□□□□□ -2.26
CCDC61Q9Y6R9 SNORD18.2-201ENST00000459604 70 ntBASIC0.9□□□□□ -2.27
CCDC61Q9Y6R9 MIR4711-201ENST00000578274 70 ntBASIC0.9□□□□□ -2.27
CCDC61Q9Y6R9 RNA5SP62-201ENST00000363457 110 ntBASIC0.88□□□□□ -2.27
CCDC61Q9Y6R9 SNORD115-33-201ENST00000363723 82 ntBASIC0.88□□□□□ -2.27
CCDC61Q9Y6R9 AL445193.1-201ENST00000441183 141 ntBASIC0.88□□□□□ -2.27
CCDC61Q9Y6R9 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.88□□□□□ -2.27
CCDC61Q9Y6R9 MIR193B-201ENST00000384907 83 ntBASIC0.87□□□□□ -2.27
CCDC61Q9Y6R9 RNA5SP347-201ENST00000362445 119 ntBASIC0.86□□□□□ -2.27
CCDC61Q9Y6R9 RNA5SP499-201ENST00000363982 119 ntBASIC0.86□□□□□ -2.27
CCDC61Q9Y6R9 MIRLET7D-201ENST00000362263 87 ntBASIC0.85□□□□□ -2.27
CCDC61Q9Y6R9 Y_RNA.178-201ENST00000363832 102 ntBASIC0.85□□□□□ -2.27
CCDC61Q9Y6R9 AC069113.3-201ENST00000521019 150 ntBASIC0.85□□□□□ -2.27
CCDC61Q9Y6R9 AC244250.2-201ENST00000418731 148 ntBASIC0.84□□□□□ -2.27
CCDC61Q9Y6R9 RNA5SP121-201ENST00000516537 101 ntBASIC0.84□□□□□ -2.27
CCDC61Q9Y6R9 MIR1273G-201ENST00000577677 100 ntBASIC0.84□□□□□ -2.27
CCDC61Q9Y6R9 SNORD74.6-201ENST00000364796 70 ntBASIC0.83□□□□□ -2.28
CCDC61Q9Y6R9 MIR548N-201ENST00000408742 75 ntBASIC0.83□□□□□ -2.28
CCDC61Q9Y6R9 SNORD114-23-201ENST00000363536 72 ntBASIC0.82□□□□□ -2.28
CCDC61Q9Y6R9 MIR548H2-201ENST00000408874 88 ntBASIC0.82□□□□□ -2.28
CCDC61Q9Y6R9 SNORD115.2-201ENST00000391126 59 ntBASIC0.81□□□□□ -2.28
CCDC61Q9Y6R9 MIR4280-201ENST00000582178 76 ntBASIC0.81□□□□□ -2.28
CCDC61Q9Y6R9 AC010487.4-201ENST00000637027 61 ntBASIC0.81□□□□□ -2.28
CCDC61Q9Y6R9 MIR610-201ENST00000385139 96 ntBASIC0.79□□□□□ -2.28
CCDC61Q9Y6R9 Y_RNA.382-201ENST00000365672 114 ntBASIC0.78□□□□□ -2.28
CCDC61Q9Y6R9 MIR146A-201ENST00000385201 99 ntBASIC0.78□□□□□ -2.28
CCDC61Q9Y6R9 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.78□□□□□ -2.28
CCDC61Q9Y6R9 Y_RNA.115-201ENST00000363272 98 ntBASIC0.77□□□□□ -2.29
CCDC61Q9Y6R9 Y_RNA.129-201ENST00000363392 110 ntBASIC0.77□□□□□ -2.29
CCDC61Q9Y6R9 MIR4743-201ENST00000584576 69 ntBASIC0.77□□□□□ -2.29
CCDC61Q9Y6R9 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC0.77□□□□□ -2.29
CCDC61Q9Y6R9 RNA5SP457-201ENST00000363657 124 ntBASIC0.76□□□□□ -2.29
CCDC61Q9Y6R9 MIR23C-201ENST00000579846 100 ntBASIC0.76□□□□□ -2.29
CCDC61Q9Y6R9 MIR6851-201ENST00000617060 67 ntBASIC0.76□□□□□ -2.29
CCDC61Q9Y6R9 Y_RNA.134-201ENST00000363435 105 ntBASIC0.75□□□□□ -2.29
CCDC61Q9Y6R9 MIR593-201ENST00000384856 100 ntBASIC0.75□□□□□ -2.29
CCDC61Q9Y6R9 RNU7-159P-201ENST00000459284 62 ntBASIC0.74□□□□□ -2.29
CCDC61Q9Y6R9 SNORD38.3-201ENST00000516599 73 ntBASIC0.74□□□□□ -2.29
CCDC61Q9Y6R9 MIR924-201ENST00000638017 53 ntBASIC0.74□□□□□ -2.29
CCDC61Q9Y6R9 Y_RNA.68-201ENST00000362881 102 ntBASIC0.73□□□□□ -2.29
CCDC61Q9Y6R9 RNU7-165P-201ENST00000458864 60 ntBASIC0.72□□□□□ -2.29
CCDC61Q9Y6R9 AC090625.1-201ENST00000357130 210 ntBASIC0.71□□□□□ -2.3
CCDC61Q9Y6R9 MIR518B-201ENST00000385127 83 ntBASIC0.7□□□□□ -2.3
CCDC61Q9Y6R9 RPL35AP4-201ENST00000412007 102 ntBASIC0.7□□□□□ -2.3
CCDC61Q9Y6R9 RNA5SP330-201ENST00000517096 96 ntBASIC0.7□□□□□ -2.3
CCDC61Q9Y6R9 MIR4315-1-201ENST00000636800 73 ntBASIC0.7□□□□□ -2.3
CCDC61Q9Y6R9 MIR4315-2-201ENST00000640925 73 ntBASIC0.7□□□□□ -2.3
CCDC61Q9Y6R9 MIR655-201ENST00000362159 97 ntBASIC0.69□□□□□ -2.3
CCDC61Q9Y6R9 MIR92A1-201ENST00000385233 78 ntBASIC0.69□□□□□ -2.3
CCDC61Q9Y6R9 Y_RNA.603-201ENST00000410571 108 ntBASIC0.69□□□□□ -2.3
CCDC61Q9Y6R9 MIR507-201ENST00000385234 94 ntBASIC0.68□□□□□ -2.3
CCDC61Q9Y6R9 RNU6-1327P-201ENST00000365302 105 ntBASIC0.67□□□□□ -2.3
CCDC61Q9Y6R9 AC114737.2-201ENST00000421583 173 ntBASIC0.66□□□□□ -2.3
CCDC61Q9Y6R9 SNORD22.1-201ENST00000516331 125 ntBASIC0.66□□□□□ -2.3
CCDC61Q9Y6R9 MIR8087-201ENST00000612745 78 ntBASIC0.66□□□□□ -2.3
CCDC61Q9Y6R9 SNORD114-17-201ENST00000364699 75 ntBASIC0.65□□□□□ -2.31
CCDC61Q9Y6R9 MIR145-201ENST00000384967 88 ntBASIC0.65□□□□□ -2.31
CCDC61Q9Y6R9 RNA5SP67-201ENST00000516422 131 ntBASIC0.65□□□□□ -2.31
CCDC61Q9Y6R9 AC013734.1-201ENST00000619329 111 ntBASIC0.65□□□□□ -2.31
CCDC61Q9Y6R9 MIR5087-201ENST00000635826 76 ntBASIC0.65□□□□□ -2.31
CCDC61Q9Y6R9 MIR330-201ENST00000362196 94 ntBASIC0.64□□□□□ -2.31
CCDC61Q9Y6R9 RNA5SP257-201ENST00000363023 116 ntBASIC0.64□□□□□ -2.31
CCDC61Q9Y6R9 Y_RNA.320-201ENST00000365144 102 ntBASIC0.64□□□□□ -2.31
CCDC61Q9Y6R9 Y_RNA.433-201ENST00000384089 102 ntBASIC0.64□□□□□ -2.31
CCDC61Q9Y6R9 Y_RNA.223-201ENST00000364290 113 ntBASIC0.63□□□□□ -2.31
CCDC61Q9Y6R9 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC0.63□□□□□ -2.31
CCDC61Q9Y6R9 SNORD49B-201ENST00000365172 72 ntBASIC0.62□□□□□ -2.31
CCDC61Q9Y6R9 RNU6-46P-201ENST00000383860 107 ntBASIC0.62□□□□□ -2.31
CCDC61Q9Y6R9 SNORD75.1-201ENST00000408373 60 ntBASIC0.62□□□□□ -2.31
CCDC61Q9Y6R9 MIR1197-201ENST00000408818 88 ntBASIC0.62□□□□□ -2.31
CCDC61Q9Y6R9 RNA5SP66-201ENST00000517178 101 ntBASIC0.62□□□□□ -2.31
CCDC61Q9Y6R9 VTRNA1-3-201ENST00000365645 89 ntBASIC0.61□□□□□ -2.31
CCDC61Q9Y6R9 MIR379-201ENST00000362218 67 ntBASIC0.6□□□□□ -2.31
CCDC61Q9Y6R9 RNU6-1091P-201ENST00000363945 107 ntBASIC0.6□□□□□ -2.31
CCDC61Q9Y6R9 AC093726.3-201ENST00000637588 150 ntBASIC0.6□□□□□ -2.31
CCDC61Q9Y6R9 Y_RNA.519-201ENST00000384553 102 ntBASIC0.59□□□□□ -2.31
CCDC61Q9Y6R9 U6.97-201ENST00000636904 101 ntBASIC0.59□□□□□ -2.31
CCDC61Q9Y6R9 RNU6-836P-201ENST00000362920 107 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 192 ms