Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.97□□□□□ -2.25
TRIM35Q9UPQ4 Y_RNA.134-201ENST00000363435 105 ntBASIC0.96□□□□□ -2.26
TRIM35Q9UPQ4 RNA5SP163-201ENST00000410304 99 ntBASIC0.96□□□□□ -2.26
TRIM35Q9UPQ4 RPL39P28-201ENST00000465655 155 ntBASIC0.96□□□□□ -2.26
TRIM35Q9UPQ4 MIR103A1-201ENST00000362165 78 ntBASIC0.95□□□□□ -2.26
TRIM35Q9UPQ4 SNORD115-33-201ENST00000363723 82 ntBASIC0.94□□□□□ -2.26
TRIM35Q9UPQ4 SNORD115.2-201ENST00000391126 59 ntBASIC0.94□□□□□ -2.26
TRIM35Q9UPQ4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.94□□□□□ -2.26
TRIM35Q9UPQ4 RN7SL793P-201ENST00000583259 296 ntBASIC0.94□□□□□ -2.26
TRIM35Q9UPQ4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.92□□□□□ -2.26
TRIM35Q9UPQ4 MIR5000-201ENST00000577717 103 ntBASIC0.92□□□□□ -2.26
TRIM35Q9UPQ4 MIR4714-201ENST00000580728 77 ntBASIC0.92□□□□□ -2.26
TRIM35Q9UPQ4 Y_RNA.178-201ENST00000363832 102 ntBASIC0.91□□□□□ -2.26
TRIM35Q9UPQ4 RNU6-815P-201ENST00000384080 113 ntBASIC0.91□□□□□ -2.26
TRIM35Q9UPQ4 SNORD18.2-201ENST00000459604 70 ntBASIC0.91□□□□□ -2.26
TRIM35Q9UPQ4 MIR6835-201ENST00000621552 64 ntBASIC0.91□□□□□ -2.26
TRIM35Q9UPQ4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.9□□□□□ -2.27
TRIM35Q9UPQ4 MIR216A-201ENST00000385063 110 ntBASIC0.9□□□□□ -2.27
TRIM35Q9UPQ4 MIR548H2-201ENST00000408874 88 ntBASIC0.9□□□□□ -2.27
TRIM35Q9UPQ4 SNORA68.3-201ENST00000515906 83 ntBASIC0.9□□□□□ -2.27
TRIM35Q9UPQ4 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC0.9□□□□□ -2.27
TRIM35Q9UPQ4 Y_RNA.129-201ENST00000363392 110 ntBASIC0.89□□□□□ -2.27
TRIM35Q9UPQ4 RNU6-1091P-201ENST00000363945 107 ntBASIC0.89□□□□□ -2.27
TRIM35Q9UPQ4 MIR892B-201ENST00000401279 77 ntBASIC0.89□□□□□ -2.27
TRIM35Q9UPQ4 AC244250.2-201ENST00000418731 148 ntBASIC0.89□□□□□ -2.27
TRIM35Q9UPQ4 RNA5SP67-201ENST00000516422 131 ntBASIC0.89□□□□□ -2.27
TRIM35Q9UPQ4 MIR4280-201ENST00000582178 76 ntBASIC0.89□□□□□ -2.27
TRIM35Q9UPQ4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.89□□□□□ -2.27
TRIM35Q9UPQ4 MIR6866-201ENST00000638146 69 ntBASIC0.89□□□□□ -2.27
TRIM35Q9UPQ4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
TRIM35Q9UPQ4 AL445193.1-201ENST00000441183 141 ntBASIC0.88□□□□□ -2.27
TRIM35Q9UPQ4 MIR508-201ENST00000384857 115 ntBASIC0.87□□□□□ -2.27
TRIM35Q9UPQ4 RNA5SP436-201ENST00000516020 115 ntBASIC0.87□□□□□ -2.27
TRIM35Q9UPQ4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.86□□□□□ -2.27
TRIM35Q9UPQ4 SNORD74.6-201ENST00000364796 70 ntBASIC0.86□□□□□ -2.27
TRIM35Q9UPQ4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.84□□□□□ -2.27
TRIM35Q9UPQ4 MIRLET7D-201ENST00000362263 87 ntBASIC0.84□□□□□ -2.27
TRIM35Q9UPQ4 RNA5SP62-201ENST00000363457 110 ntBASIC0.84□□□□□ -2.27
TRIM35Q9UPQ4 RNA5SP499-201ENST00000363982 119 ntBASIC0.84□□□□□ -2.27
TRIM35Q9UPQ4 Y_RNA.320-201ENST00000365144 102 ntBASIC0.84□□□□□ -2.27
TRIM35Q9UPQ4 Y_RNA.519-201ENST00000384553 102 ntBASIC0.84□□□□□ -2.27
TRIM35Q9UPQ4 MIR146A-201ENST00000385201 99 ntBASIC0.84□□□□□ -2.27
TRIM35Q9UPQ4 AC069113.3-201ENST00000521019 150 ntBASIC0.84□□□□□ -2.27
TRIM35Q9UPQ4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.82□□□□□ -2.28
TRIM35Q9UPQ4 MIR193B-201ENST00000384907 83 ntBASIC0.82□□□□□ -2.28
TRIM35Q9UPQ4 MIR6851-201ENST00000617060 67 ntBASIC0.82□□□□□ -2.28
TRIM35Q9UPQ4 AC013734.1-201ENST00000619329 111 ntBASIC0.82□□□□□ -2.28
TRIM35Q9UPQ4 RNA5SP457-201ENST00000363657 124 ntBASIC0.81□□□□□ -2.28
TRIM35Q9UPQ4 MIR581-201ENST00000384895 96 ntBASIC0.81□□□□□ -2.28
TRIM35Q9UPQ4 RPL35AP4-201ENST00000412007 102 ntBASIC0.81□□□□□ -2.28
TRIM35Q9UPQ4 MIR1273G-201ENST00000577677 100 ntBASIC0.81□□□□□ -2.28
TRIM35Q9UPQ4 MIR23C-201ENST00000579846 100 ntBASIC0.81□□□□□ -2.28
TRIM35Q9UPQ4 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC0.81□□□□□ -2.28
TRIM35Q9UPQ4 Y_RNA.223-201ENST00000364290 113 ntBASIC0.8□□□□□ -2.28
TRIM35Q9UPQ4 MIR655-201ENST00000362159 97 ntBASIC0.79□□□□□ -2.28
TRIM35Q9UPQ4 Y_RNA.68-201ENST00000362881 102 ntBASIC0.79□□□□□ -2.28
TRIM35Q9UPQ4 RNU6-68P-201ENST00000516576 104 ntBASIC0.79□□□□□ -2.28
TRIM35Q9UPQ4 SNORD38.3-201ENST00000516599 73 ntBASIC0.79□□□□□ -2.28
TRIM35Q9UPQ4 MIR4653-201ENST00000585107 83 ntBASIC0.79□□□□□ -2.28
TRIM35Q9UPQ4 RNU6-836P-201ENST00000362920 107 ntBASIC0.78□□□□□ -2.28
TRIM35Q9UPQ4 Y_RNA.603-201ENST00000410571 108 ntBASIC0.77□□□□□ -2.29
TRIM35Q9UPQ4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.75□□□□□ -2.29
TRIM35Q9UPQ4 RNA5SP121-201ENST00000516537 101 ntBASIC0.75□□□□□ -2.29
TRIM35Q9UPQ4 MIR4743-201ENST00000584576 69 ntBASIC0.75□□□□□ -2.29
TRIM35Q9UPQ4 MIR507-201ENST00000385234 94 ntBASIC0.74□□□□□ -2.29
TRIM35Q9UPQ4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.73□□□□□ -2.29
TRIM35Q9UPQ4 MIR593-201ENST00000384856 100 ntBASIC0.73□□□□□ -2.29
TRIM35Q9UPQ4 MIR610-201ENST00000385139 96 ntBASIC0.73□□□□□ -2.29
TRIM35Q9UPQ4 RNU7-165P-201ENST00000458864 60 ntBASIC0.73□□□□□ -2.29
TRIM35Q9UPQ4 MIR924-201ENST00000638017 53 ntBASIC0.72□□□□□ -2.29
TRIM35Q9UPQ4 MIR379-201ENST00000362218 67 ntBASIC0.71□□□□□ -2.3
TRIM35Q9UPQ4 MIR518B-201ENST00000385127 83 ntBASIC0.71□□□□□ -2.3
TRIM35Q9UPQ4 MIR548T-201ENST00000408369 74 ntBASIC0.71□□□□□ -2.3
TRIM35Q9UPQ4 SNORD22.1-201ENST00000516331 125 ntBASIC0.71□□□□□ -2.3
TRIM35Q9UPQ4 U6.97-201ENST00000636904 101 ntBASIC0.71□□□□□ -2.3
TRIM35Q9UPQ4 SNORD114-23-201ENST00000363536 72 ntBASIC0.7□□□□□ -2.3
TRIM35Q9UPQ4 SNORD114-17-201ENST00000364699 75 ntBASIC0.7□□□□□ -2.3
TRIM35Q9UPQ4 RNA5SP193-201ENST00000410353 107 ntBASIC0.7□□□□□ -2.3
TRIM35Q9UPQ4 RNU7-159P-201ENST00000459284 62 ntBASIC0.7□□□□□ -2.3
TRIM35Q9UPQ4 MIR6513-201ENST00000621188 64 ntBASIC0.7□□□□□ -2.3
TRIM35Q9UPQ4 MIR92A1-201ENST00000385233 78 ntBASIC0.69□□□□□ -2.3
TRIM35Q9UPQ4 AC010487.4-201ENST00000637027 61 ntBASIC0.69□□□□□ -2.3
TRIM35Q9UPQ4 RNA5SP257-201ENST00000363023 116 ntBASIC0.68□□□□□ -2.3
TRIM35Q9UPQ4 Y_RNA.260-201ENST00000364628 101 ntBASIC0.68□□□□□ -2.3
TRIM35Q9UPQ4 RNA5SP330-201ENST00000517096 96 ntBASIC0.68□□□□□ -2.3
TRIM35Q9UPQ4 RNA5SP224-201ENST00000365069 126 ntBASIC0.67□□□□□ -2.3
TRIM35Q9UPQ4 SNORD75.1-201ENST00000408373 60 ntBASIC0.67□□□□□ -2.3
TRIM35Q9UPQ4 MIR4315-1-201ENST00000636800 73 ntBASIC0.66□□□□□ -2.3
TRIM35Q9UPQ4 MIR4315-2-201ENST00000640925 73 ntBASIC0.66□□□□□ -2.3
TRIM35Q9UPQ4 AC090625.1-201ENST00000357130 210 ntBASIC0.65□□□□□ -2.31
TRIM35Q9UPQ4 MIR145-201ENST00000384967 88 ntBASIC0.65□□□□□ -2.31
TRIM35Q9UPQ4 MIR936-201ENST00000401264 98 ntBASIC0.65□□□□□ -2.31
TRIM35Q9UPQ4 AC120024.2-201ENST00000576526 175 ntBASIC0.65□□□□□ -2.31
TRIM35Q9UPQ4 MIR8087-201ENST00000612745 78 ntBASIC0.65□□□□□ -2.31
TRIM35Q9UPQ4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.64□□□□□ -2.31
TRIM35Q9UPQ4 RNA5SP347-201ENST00000362445 119 ntBASIC0.63□□□□□ -2.31
TRIM35Q9UPQ4 RNU6-563P-201ENST00000364872 108 ntBASIC0.63□□□□□ -2.31
TRIM35Q9UPQ4 RNA5SP66-201ENST00000517178 101 ntBASIC0.63□□□□□ -2.31
TRIM35Q9UPQ4 MIR4711-201ENST00000578274 70 ntBASIC0.63□□□□□ -2.31
TRIM35Q9UPQ4 SNORD18C-201ENST00000362704 69 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 221.1 ms